RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 HPRT1P00492 218 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 RLN2P04090 185 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 RRASP10301 218 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 SLC25A16P16260 332 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 LPAR6P43657 344 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 ARHGDIBP52566 201 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 LMO4P61968 165 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 RPL30P62888 115 aaKnown RBP10.49□□□□□ -0.73
VPS13D-205ENST00000473099 IL15RAQ13261 267 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 ZNF585BQ52M93 769 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 NMSQ5H8A3 153 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 DHRS7BQ6IAN0 325 aaPredicted RBP10.49□□□□□ -0.73
VPS13D-205ENST00000473099 ZNF833PQ6ZTB9 187 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 LRRC75A-AS1Q8N1F1 130 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 ABHD12Q8N2K0 398 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 OR13D1Q8NGV5 346 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 OR4S2Q8NH73 311 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 AIFM2Q9BRQ8 373 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 HEXA-AS1Q9H8Q6 139 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 UNKLQ9H9P5 680 aaKnown RBP10.49□□□□□ -0.73
VPS13D-205ENST00000473099 PLEKHA2Q9HB19 425 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 GSKIPQ9P0R6 139 aa10.49□□□□□ -0.73
VPS13D-205ENST00000473099 POLR3KQ9Y2Y1 108 aaPredicted RBP10.49□□□□□ -0.73
VPS13D-205ENST00000473099 NOTCH2Q04721 2471 aa10.48□□□□□ -0.73
VPS13D-205ENST00000473099 IGHV2-26A0A0B4J1V2 119 aa10.48□□□□□ -0.73
VPS13D-205ENST00000473099 LINC00473A8K010 186 aa10.48□□□□□ -0.73
VPS13D-205ENST00000473099 MPTX1A8MV57 137 aa10.48□□□□□ -0.73
VPS13D-205ENST00000473099 TXNL1O43396 289 aa10.48□□□□□ -0.73
VPS13D-205ENST00000473099 IGHV3-7P01780 117 aa10.48□□□□□ -0.73
VPS13D-205ENST00000473099 PRTN3P24158 256 aa10.48□□□□□ -0.73
VPS13D-205ENST00000473099 NKX2-5P52952 324 aaPredicted RBP10.48□□□□□ -0.73
VPS13D-205ENST00000473099 RTL8BQ17RB0 113 aa10.48□□□□□ -0.73
VPS13D-205ENST00000473099 RPL39P5Q59GN2 51 aa10.48□□□□□ -0.73
VPS13D-205ENST00000473099 PRSS54Q6PEW0 395 aa10.48□□□□□ -0.73
VPS13D-205ENST00000473099 DRAXINQ8NBI3 349 aaPredicted RBP10.48□□□□□ -0.73
VPS13D-205ENST00000473099 OR11H4Q8NGC9 324 aa10.48□□□□□ -0.73
VPS13D-205ENST00000473099 DDB2Q92466 427 aa10.48□□□□□ -0.73
VPS13D-205ENST00000473099 MARVELD3Q96A59 401 aa10.48□□□□□ -0.73
VPS13D-205ENST00000473099 WDR89Q96FK6 387 aaPredicted RBP10.48□□□□□ -0.73
VPS13D-205ENST00000473099 PERPQ96FX8 193 aa10.48□□□□□ -0.73
VPS13D-205ENST00000473099 ZNF251Q9BRH9 671 aa10.48□□□□□ -0.73
VPS13D-205ENST00000473099 COA4Q9NYJ1 87 aa10.48□□□□□ -0.73
VPS13D-205ENST00000473099 CACFD1Q9UGQ2 172 aa10.48□□□□□ -0.73
VPS13D-205ENST00000473099 MMP24Q9Y5R2 645 aa10.48□□□□□ -0.73
VPS13D-205ENST00000473099 TET2Q6N021 2002 aaPredicted RBP10.48□□□□□ -0.73
VPS13D-205ENST00000473099 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.47□□□□□ -0.73
VPS13D-205ENST00000473099 ABCA2Q9BZC7 2435 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 FXYD6-FXYD2A0A087WZ82 144 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 TRAV14DV4A0A0A6YYC5 116 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 IGHV2-70DA0A0C4DH43 119 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 A0A1W2PPE3 182 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 FAM90A9PA6NNJ1 464 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 ST8SIA3O43173 380 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 PROP1O75360 226 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 APOA2P02652 100 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 LYL1P12980 280 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 COL8A1P27658 744 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 NUP62P37198 522 aaPredicted RBP10.47□□□□□ -0.73
VPS13D-205ENST00000473099 HLA-DRB5Q30154 266 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 LRRC37A5PQ49AS3 106 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 NCR3LG1Q68D85 454 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 ZNF546Q86UE3 836 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 LURAP1LQ8IV03 231 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 C9orf62Q8N4C0 152 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 OR4D5Q8NGN0 318 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 PCGF1Q9BSM1 259 aa10.47□□□□□ -0.73
VPS13D-205ENST00000473099 MED13LQ71F56 2210 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 A0A0D9SG52 128 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 FAM90A26D6RGX4 464 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 L7N2F9 121 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 FCGR3BO75015 233 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 OR2F2O95006 317 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 IGKV1-39P01597 117 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 IGLV1-47P01700 117 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 IGKV1D-39P04432 117 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 NQO2P16083 231 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 PVALBP20472 110 aaPredicted RBP10.46□□□□□ -0.73
VPS13D-205ENST00000473099 NKX2-1P43699 371 aaPredicted RBP10.46□□□□□ -0.73
VPS13D-205ENST00000473099 ERVK-16P61578 105 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 ARF6P62330 175 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 PAX2Q02962 417 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 ZNF816Q0VGE8 651 aaPredicted RBP10.46□□□□□ -0.73
VPS13D-205ENST00000473099 OR2F1Q13607 317 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 RAB32Q13637 225 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 ZNF345Q14585 488 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 Q5BKY6 102 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 INO80EQ8NBZ0 244 aaPredicted RBP10.46□□□□□ -0.73
VPS13D-205ENST00000473099 OR11H6Q8NGC7 330 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 ST6GALNAC6Q969X2 333 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 HSPB11Q9Y547 144 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 POMT1Q9Y6A1 747 aa10.46□□□□□ -0.73
VPS13D-205ENST00000473099 E5RGE8 158 aa10.45□□□□□ -0.74
VPS13D-205ENST00000473099 ARPC5O15511 151 aa10.45□□□□□ -0.74
VPS13D-205ENST00000473099 RAMP3O60896 148 aa10.45□□□□□ -0.74
VPS13D-205ENST00000473099 DEDDO75618 318 aa10.45□□□□□ -0.74
VPS13D-205ENST00000473099 S1PR2O95136 353 aa10.45□□□□□ -0.74
VPS13D-205ENST00000473099 HRASP01112 189 aa10.45□□□□□ -0.74
VPS13D-205ENST00000473099 IGKV1-5P01602 117 aa10.45□□□□□ -0.74
VPS13D-205ENST00000473099 MMP9P14780 707 aa10.45□□□□□ -0.74
VPS13D-205ENST00000473099 MC5RP33032 325 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms