RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 OR2T10Q8NGZ9 312 aa3.18□□□□□ -1.9
HMGB1-207ENST00000468384 MARCH1Q8TCQ1 289 aa3.18□□□□□ -1.9
HMGB1-207ENST00000468384 CACNG8Q8WXS5 425 aa3.18□□□□□ -1.9
HMGB1-207ENST00000468384 TRNT1Q96Q11 434 aaKnown RBP3.18□□□□□ -1.9
HMGB1-207ENST00000468384 TLNRD1Q9H1K6 362 aa3.18□□□□□ -1.9
HMGB1-207ENST00000468384 DCAF13Q9NV06 445 aaKnown RBP3.18□□□□□ -1.9
HMGB1-207ENST00000468384 TRAV36DV7A0A075B6V5 113 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 A0A1W2PPE3 182 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 SMCO3A2RU48 225 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 C11orf98E9PRG8 122 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 K7EQD1 137 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 OR7A17O14581 309 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 NDUFS6O75380 124 aaKnown RBP3.17□□□□□ -1.9
HMGB1-207ENST00000468384 KLHL2O95198 593 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 GKN3PP0CG01 181 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 CBLN1P23435 193 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 FCGR2CP31995 323 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 CRYBA2P53672 197 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 COPZ1P61923 177 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 ASAH1Q13510 395 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 DIAPH2-AS1Q14236 149 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 PTGES3Q15185 160 aaKnown RBP3.17□□□□□ -1.9
HMGB1-207ENST00000468384 FAM71F2Q6NXP2 309 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 C19orf35Q6ZS72 473 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 C10orf107Q8IVU9 208 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 FAM58AQ8N1B3 248 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 CD177Q8N6Q3 437 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 NOXO1Q8NFA2 376 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 STXBP6Q8NFX7 210 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 OR8S1Q8NH09 359 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 OR1L1Q8NH94 360 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 OR1F12Q8NHA8 337 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 PYROXD1Q8WU10 500 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 SLC38A4Q969I6 547 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 ASB9Q96DX5 294 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 CERS2Q96G23 380 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 OR52E6Q96RD3 313 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 NRIP2Q9BQI9 281 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 GAL3ST2Q9H3Q3 398 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 ZNF556Q9HAH1 456 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 ZNF286AQ9HBT8 521 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 NUDT4Q9NZJ9 180 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 PSMC3IPQ9P2W1 217 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-207ENST00000468384 AP3M1Q9Y2T2 418 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 ATP6V1DQ9Y5K8 247 aa3.17□□□□□ -1.9
HMGB1-207ENST00000468384 DSTQ03001 7570 aaKnown RBP3.17□□□□□ -1.9
HMGB1-207ENST00000468384 IGHV3OR16-8A0A075B7F1 116 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 IGHV7-81A0A0B4J1V7 117 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 IGHV3-72A0A0B4J1Y9 119 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 IGKV1D-43A0A0B4J1Z2 117 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 OR6C6A6NF89 314 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 PMS2P5A8MQ11 134 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 BLOC1S5-TXNDC5H3BN57 136 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 TPST2O60704 377 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 SUPT3HO75486 399 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 ADAP1O75689 374 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 GATBO75879 557 aaKnown RBP3.16□□□□□ -1.9
HMGB1-207ENST00000468384 NXPH4O95158 308 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 GAPDHP04406 335 aaKnown RBP3.16□□□□□ -1.9
HMGB1-207ENST00000468384 REG1AP05451 166 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 HPCAL1P37235 193 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 RAB7AP51149 207 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 SLC7A2P52569 658 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 PLP1P60201 277 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 ZNF85Q03923 595 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 SCRN3Q0VDG4 424 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 UBE2V2Q15819 145 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 LRRC36Q1X8D7 754 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 SPIN4Q56A73 249 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 OR52W1Q6IF63 320 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 C5orf46Q6UWT4 87 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 SSX9Q7RTT3 188 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 TMEM17Q86X19 198 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 ZNF565Q8N9K5 539 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 C11orf52Q96A22 123 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 RAB3CQ96E17 227 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 MBOAT4Q96T53 435 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 UQCC2Q9BRT2 126 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 ZNF436Q9C0F3 470 aaPredicted RBP3.16□□□□□ -1.9
HMGB1-207ENST00000468384 POLDIP2Q9Y2S7 368 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 EXOSC1Q9Y3B2 195 aaKnown RBP3.16□□□□□ -1.9
HMGB1-207ENST00000468384 PYGO1Q9Y3Y4 419 aa3.16□□□□□ -1.9
HMGB1-207ENST00000468384 IGKV1D-42A0A075B6H8 117 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 RFPL4AA6NLU0 287 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 RFPL4AL1F8VTS6 287 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 BGLAPP02818 100 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 GUSBP08236 651 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 OR9G9P0C7N8 305 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 GNB3P16520 340 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 CD40LGP29965 261 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 HAAOP46952 286 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 P2RY1P47900 373 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 EDDM3BP56851 147 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 ATP6V0D1P61421 351 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 MRPS15P82914 257 aaKnown RBP3.15□□□□□ -1.91
HMGB1-207ENST00000468384 PAX5Q02548 391 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 FMODQ06828 376 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 AESQ08117 197 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 CRMP1Q14194 572 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 ATXN7L3Q14CW9 347 aaPredicted RBP3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms