RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 HLA-DRB1P01911 266 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 APOA2P02652 100 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 IGF1P05019 195 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 CNTFRP26992 372 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 ALDH3B2P48448 385 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 RORCP51449 518 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 CTF1Q16619 201 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 TEX38Q6PEX7 206 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 C10orf99Q6UWK7 81 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 GPR141Q7Z602 305 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 ZNF329Q86UD4 541 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 HOGA1Q86XE5 327 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 PDPNQ86YL7 162 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 LILRB2Q8N423 598 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 ZNF383Q8NA42 475 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 BEST4Q8NFU0 473 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 TSNAXQ99598 290 aaKnown RBP10.27□□□□□ -0.77
COL28A1-206ENST00000465339 HSPB9Q9BQS6 159 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 ZFP57Q9NU63 452 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 LINC00527Q9UJ94 153 aa10.27□□□□□ -0.77
COL28A1-206ENST00000465339 SMIM31A0A1B0GVY4 71 aa10.26□□□□□ -0.77
COL28A1-206ENST00000465339 RRHO14718 337 aa10.26□□□□□ -0.77
COL28A1-206ENST00000465339 PLXNB1O43157 2135 aa10.26□□□□□ -0.77
COL28A1-206ENST00000465339 OR5H8P0DN80 308 aa10.26□□□□□ -0.77
COL28A1-206ENST00000465339 THBS3P49746 956 aa10.26□□□□□ -0.77
COL28A1-206ENST00000465339 LUMP51884 338 aaPredicted RBP10.26□□□□□ -0.77
COL28A1-206ENST00000465339 ARPC4P59998 168 aa10.26□□□□□ -0.77
COL28A1-206ENST00000465339 RPS16P62249 146 aaKnown RBP10.26□□□□□ -0.77
COL28A1-206ENST00000465339 CBX3Q13185 183 aa10.26□□□□□ -0.77
COL28A1-206ENST00000465339 TMEM69Q5SWH9 247 aa10.26□□□□□ -0.77
COL28A1-206ENST00000465339 GPR107Q5VW38 600 aa10.26□□□□□ -0.77
COL28A1-206ENST00000465339 FLYWCH2Q96CP2 140 aaKnown RBP10.26□□□□□ -0.77
COL28A1-206ENST00000465339 ADTRPQ96IZ2 230 aa10.26□□□□□ -0.77
COL28A1-206ENST00000465339 OR51J1Q9H342 316 aa10.26□□□□□ -0.77
COL28A1-206ENST00000465339 NOTCH1P46531 2555 aa10.26□□□□□ -0.77
COL28A1-206ENST00000465339 A0A1W2PRX2 142 aa10.25□□□□□ -0.77
COL28A1-206ENST00000465339 SPDEFO95238 335 aa10.25□□□□□ -0.77
COL28A1-206ENST00000465339 HLA-DQB1P01920 261 aa10.25□□□□□ -0.77
COL28A1-206ENST00000465339 APOA1P02647 267 aa10.25□□□□□ -0.77
COL28A1-206ENST00000465339 RRASP10301 218 aa10.25□□□□□ -0.77
COL28A1-206ENST00000465339 VDAC1P21796 283 aa10.25□□□□□ -0.77
COL28A1-206ENST00000465339 SLC6A1P30531 599 aa10.25□□□□□ -0.77
COL28A1-206ENST00000465339 LGALS7P47929 136 aa10.25□□□□□ -0.77
COL28A1-206ENST00000465339 LINC00205P59089 165 aa10.25□□□□□ -0.77
COL28A1-206ENST00000465339 PLGLAQ15195 96 aa10.25□□□□□ -0.77
COL28A1-206ENST00000465339 KHDC1LQ5JSQ8 128 aa10.25□□□□□ -0.77
COL28A1-206ENST00000465339 ZNF660Q6AZW8 331 aaPredicted RBP10.25□□□□□ -0.77
COL28A1-206ENST00000465339 MZT2AQ6P582 158 aa10.25□□□□□ -0.77
COL28A1-206ENST00000465339 ZNF645Q8N7E2 425 aa10.25□□□□□ -0.77
COL28A1-206ENST00000465339 AP3S1Q92572 193 aa10.25□□□□□ -0.77
COL28A1-206ENST00000465339 NAA50Q9GZZ1 169 aaKnown RBP10.25□□□□□ -0.77
COL28A1-206ENST00000465339 FBXL15Q9H469 300 aa10.25□□□□□ -0.77
COL28A1-206ENST00000465339 SLC35D1Q9NTN3 355 aa10.25□□□□□ -0.77
COL28A1-206ENST00000465339 COMMD3Q9UBI1 195 aa10.25□□□□□ -0.77
COL28A1-206ENST00000465339 IGHV7-81A0A0B4J1V7 117 aa10.24□□□□□ -0.77
COL28A1-206ENST00000465339 TUSC2O75896 110 aa10.24□□□□□ -0.77
COL28A1-206ENST00000465339 IGHG4P01861 327 aa10.24□□□□□ -0.77
COL28A1-206ENST00000465339 IGKV1-16P04430 117 aa10.24□□□□□ -0.77
COL28A1-206ENST00000465339 ELANEP08246 267 aa10.24□□□□□ -0.77
COL28A1-206ENST00000465339 ZNF182P17025 639 aaPredicted RBP10.24□□□□□ -0.77
COL28A1-206ENST00000465339 NFYAP23511 347 aaPredicted RBP10.24□□□□□ -0.77
COL28A1-206ENST00000465339 DUTP33316 252 aaKnown RBP10.24□□□□□ -0.77
COL28A1-206ENST00000465339 TAS2R20P59543 309 aa10.24□□□□□ -0.77
COL28A1-206ENST00000465339 FOXE3Q13461 319 aa10.24□□□□□ -0.77
COL28A1-206ENST00000465339 PSG5Q15238 335 aa10.24□□□□□ -0.77
COL28A1-206ENST00000465339 RTL8BQ17RB0 113 aa10.24□□□□□ -0.77
COL28A1-206ENST00000465339 CXorf66Q5JRM2 361 aaPredicted RBP10.24□□□□□ -0.77
COL28A1-206ENST00000465339 GVQW1Q8N7I0 195 aa10.24□□□□□ -0.77
COL28A1-206ENST00000465339 NECAP2Q9NVZ3 263 aa10.24□□□□□ -0.77
COL28A1-206ENST00000465339 METTL1Q9UBP6 276 aaKnown RBP10.24□□□□□ -0.77
COL28A1-206ENST00000465339 MEGF8Q7Z7M0 2845 aa10.23□□□□□ -0.77
COL28A1-206ENST00000465339 EIF4EP06730 217 aaKnown RBP10.23□□□□□ -0.77
COL28A1-206ENST00000465339 PF4V1P10720 104 aa10.23□□□□□ -0.77
COL28A1-206ENST00000465339 PTHLHP12272 177 aa10.23□□□□□ -0.77
COL28A1-206ENST00000465339 PRSS3P35030 304 aa10.23□□□□□ -0.77
COL28A1-206ENST00000465339 RPL23AP62750 156 aaKnown RBP10.23□□□□□ -0.77
COL28A1-206ENST00000465339 CX3CL1P78423 397 aa10.23□□□□□ -0.77
COL28A1-206ENST00000465339 CFHR3Q02985 330 aa10.23□□□□□ -0.77
COL28A1-206ENST00000465339 TMEM177Q53S58 311 aa10.23□□□□□ -0.77
COL28A1-206ENST00000465339 ZNF562Q6V9R5 426 aa10.23□□□□□ -0.77
COL28A1-206ENST00000465339 RNF152Q8N8N0 203 aa10.23□□□□□ -0.77
COL28A1-206ENST00000465339 BVESQ8NE79 360 aa10.23□□□□□ -0.77
COL28A1-206ENST00000465339 OR5AP2Q8NGF4 316 aa10.23□□□□□ -0.77
COL28A1-206ENST00000465339 C5orf30Q96GV9 206 aa10.23□□□□□ -0.77
COL28A1-206ENST00000465339 IFT46Q9NQC8 304 aa10.23□□□□□ -0.77
COL28A1-206ENST00000465339 PARP11Q9NR21 331 aa10.23□□□□□ -0.77
COL28A1-206ENST00000465339 TRAV41A0A0B4J266 112 aa10.22□□□□□ -0.77
COL28A1-206ENST00000465339 J3QRK9 145 aa10.22□□□□□ -0.77
COL28A1-206ENST00000465339 FCN1O00602 326 aa10.22□□□□□ -0.77
COL28A1-206ENST00000465339 ATP6V0E1O15342 81 aa10.22□□□□□ -0.77
COL28A1-206ENST00000465339 ELK1P19419 428 aa10.22□□□□□ -0.77
COL28A1-206ENST00000465339 PPIFP30405 207 aaKnown RBP10.22□□□□□ -0.77
COL28A1-206ENST00000465339 FCGR2CP31995 323 aa10.22□□□□□ -0.77
COL28A1-206ENST00000465339 RPL5P46777 297 aaKnown RBP10.22□□□□□ -0.77
COL28A1-206ENST00000465339 CDX1P47902 265 aaPredicted RBP10.22□□□□□ -0.77
COL28A1-206ENST00000465339 TMEM267Q0VDI3 215 aaPredicted RBP10.22□□□□□ -0.77
COL28A1-206ENST00000465339 WFDC9Q8NEX5 89 aa10.22□□□□□ -0.77
COL28A1-206ENST00000465339 GIMAP1Q8WWP7 306 aa10.22□□□□□ -0.77
COL28A1-206ENST00000465339 DDB2Q92466 427 aa10.22□□□□□ -0.77
COL28A1-206ENST00000465339 HSD17B10Q99714 261 aaKnown RBP10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms