RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 ADTRPQ96IZ2 230 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 RITA1Q96K30 269 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 NOL4LQ96MY1 436 aaPredicted RBP9.05□□□□□ -0.96
COL28A1-203ENST00000435823 TSNAXQ99598 290 aaKnown RBP9.05□□□□□ -0.96
COL28A1-203ENST00000435823 CITED2Q99967 270 aaPredicted RBP9.05□□□□□ -0.96
COL28A1-203ENST00000435823 SLC35D1Q9NTN3 355 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 NECAP2Q9NVZ3 263 aa9.05□□□□□ -0.96
COL28A1-203ENST00000435823 MRPS7Q9Y2R9 242 aaKnown RBP9.05□□□□□ -0.96
COL28A1-203ENST00000435823 MEIS3P1A6NDR6 274 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 RRHO14718 337 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 HPGDSO60760 199 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 HLA-DRB1P01911 266 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 HLA-DQB1P01920 261 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 FCER2P06734 321 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 RRASP10301 218 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 VDAC1P21796 283 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 FCGR2CP31995 323 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 RPS16P62249 146 aaKnown RBP9.04□□□□□ -0.96
COL28A1-203ENST00000435823 CD83Q01151 205 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 CDK10Q15131 360 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 RTL8BQ17RB0 113 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 KHDC1LQ5JSQ8 128 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 HIST2H2BDQ6DRA6 164 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 LIN54Q6MZP7 749 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 COMMD1Q8N668 190 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 OR4F17Q8NGA8 305 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 OR5AP2Q8NGF4 316 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 FAM110DQ8TAY7 271 aaPredicted RBP9.04□□□□□ -0.96
COL28A1-203ENST00000435823 FLYWCH2Q96CP2 140 aaKnown RBP9.04□□□□□ -0.96
COL28A1-203ENST00000435823 OR4F4Q96R69 305 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 HSPB9Q9BQS6 159 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 LINC00527Q9UJ94 153 aa9.04□□□□□ -0.96
COL28A1-203ENST00000435823 TSSC4Q9Y5U2 329 aaPredicted RBP9.04□□□□□ -0.96
COL28A1-203ENST00000435823 LINC01548A6NM66 108 aa9.03□□□□□ -0.96
COL28A1-203ENST00000435823 TUSC2O75896 110 aa9.03□□□□□ -0.96
COL28A1-203ENST00000435823 SPDEFO95238 335 aa9.03□□□□□ -0.96
COL28A1-203ENST00000435823 OR5H8P0DN80 308 aa9.03□□□□□ -0.96
COL28A1-203ENST00000435823 ELK1P19419 428 aa9.03□□□□□ -0.96
COL28A1-203ENST00000435823 LINC00205P59089 165 aa9.03□□□□□ -0.96
COL28A1-203ENST00000435823 TAS2R46P59540 309 aa9.03□□□□□ -0.96
COL28A1-203ENST00000435823 SPCS2Q15005 226 aa9.03□□□□□ -0.96
COL28A1-203ENST00000435823 ZNF329Q86UD4 541 aa9.03□□□□□ -0.96
COL28A1-203ENST00000435823 SNAPC3Q92966 411 aa9.03□□□□□ -0.96
COL28A1-203ENST00000435823 C5orf30Q96GV9 206 aa9.03□□□□□ -0.96
COL28A1-203ENST00000435823 FBXL15Q9H469 300 aa9.03□□□□□ -0.96
COL28A1-203ENST00000435823 SCPEP1Q9HB40 452 aa9.03□□□□□ -0.96
COL28A1-203ENST00000435823 ADAM30Q9UKF2 790 aa9.03□□□□□ -0.96
COL28A1-203ENST00000435823 A0A1W2PRX2 142 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 J3QL48 77 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 RGS5O15539 181 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 PPYP01298 95 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 IGKV1-16P04430 117 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 IGF1P05019 195 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 PF4V1P10720 104 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 DUTP33316 252 aaKnown RBP9.02□□□□□ -0.97
COL28A1-203ENST00000435823 LGALS7P47929 136 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 PSG5Q15238 335 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 TCTEX1D4Q5JR98 221 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 TEX38Q6PEX7 206 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 C10orf99Q6UWK7 81 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 SNX29P2Q8IUI4 249 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 BVESQ8NE79 360 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 OR5H2Q8NGV7 314 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 C15orf40Q8WUR7 153 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 R3HDM4Q96D70 268 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 HARBI1Q96MB7 349 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 OR51J1Q9H342 316 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 PARP11Q9NR21 331 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 EHFQ9NZC4 300 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 CCDC59Q9P031 241 aaKnown RBP9.02□□□□□ -0.97
COL28A1-203ENST00000435823 METTL1Q9UBP6 276 aaKnown RBP9.02□□□□□ -0.97
COL28A1-203ENST00000435823 EXTL2Q9UBQ6 330 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 ZNF580Q9UK33 172 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 ANAPC10Q9UM13 185 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 RBMX2Q9Y388 322 aaKnown RBP9.02□□□□□ -0.97
COL28A1-203ENST00000435823 PRELID3BQ9Y3B1 194 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 PKD1L1Q8TDX9 2849 aa9.02□□□□□ -0.97
COL28A1-203ENST00000435823 NBEAL1Q6ZS30 2694 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 IGHV7-81A0A0B4J1V7 117 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 IGKV1D-13A0A0B4J2D9 117 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 SULT1C2O00338 296 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 SHOXO15266 292 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 SLC25A17O43808 307 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 IGKV1-13P0DP09 117 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 AADACP22760 399 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 HERV-K104P61576 105 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 TMEM177Q53S58 311 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 CXorf66Q5JRM2 361 aaPredicted RBP9.01□□□□□ -0.97
COL28A1-203ENST00000435823 ZNF660Q6AZW8 331 aaPredicted RBP9.01□□□□□ -0.97
COL28A1-203ENST00000435823 KCTD9Q7L273 389 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 GPX8Q8TED1 209 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 ABHD5Q8WTS1 349 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 SECTM1Q8WVN6 248 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 GIMAP1Q8WWP7 306 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 ISOC1Q96CN7 298 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 CLCC1Q96S66 551 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 HSD17B10Q99714 261 aaKnown RBP9.01□□□□□ -0.97
COL28A1-203ENST00000435823 KRTAP4-8Q9BYQ9 185 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 ZFP57Q9NU63 452 aa9.01□□□□□ -0.97
COL28A1-203ENST00000435823 MGAM2Q2M2H8 2515 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms