RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 ZNF705AQ6ZN79 300 aaPredicted RBP13.4□□□□□ -0.26
HMGA1-202ENST00000347617 Q6ZRM9 215 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 COLCA1Q6ZS62 124 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 TMEM251Q8N6I4 163 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 OR51H1Q8NH63 302 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 CMTM2Q8TAZ6 248 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 TMEM45BQ96B21 275 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 FOXB1Q99853 325 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 GPR35Q9HC97 309 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 TMEM106BQ9NUM4 274 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 IGKV3D-15A0A087WSY6 115 aa13.39□□□□□ -0.27
HMGA1-202ENST00000347617 IGHV3-15A0A0B4J1V0 119 aa13.39□□□□□ -0.27
HMGA1-202ENST00000347617 A0A0U1RQK1 487 aa13.39□□□□□ -0.27
HMGA1-202ENST00000347617 ZNF320A2RRD8 509 aa13.39□□□□□ -0.27
HMGA1-202ENST00000347617 NKX2-8O15522 239 aa13.39□□□□□ -0.27
HMGA1-202ENST00000347617 IGKV1-39P01597 117 aa13.39□□□□□ -0.27
HMGA1-202ENST00000347617 IGKV1-5P01602 117 aa13.39□□□□□ -0.27
HMGA1-202ENST00000347617 IGKV1D-39P04432 117 aa13.39□□□□□ -0.27
HMGA1-202ENST00000347617 MMP7P09237 267 aaPredicted RBP13.39□□□□□ -0.27
HMGA1-202ENST00000347617 MEOX1P50221 254 aa13.39□□□□□ -0.27
HMGA1-202ENST00000347617 RSPO4Q2I0M5 234 aaPredicted RBP13.39□□□□□ -0.27
HMGA1-202ENST00000347617 SPANXN5Q5MJ07 72 aa13.39□□□□□ -0.27
HMGA1-202ENST00000347617 FAM78BQ5VT40 261 aa13.39□□□□□ -0.27
HMGA1-202ENST00000347617 ZDHHC23Q8IYP9 409 aa13.39□□□□□ -0.27
HMGA1-202ENST00000347617 ZNF709Q8N972 641 aa13.39□□□□□ -0.27
HMGA1-202ENST00000347617 DIRC2Q96SL1 478 aa13.39□□□□□ -0.27
HMGA1-202ENST00000347617 KCNIP2Q9NS61 270 aa13.39□□□□□ -0.27
HMGA1-202ENST00000347617 NCKAP5O14513 1909 aa13.39□□□□□ -0.27
HMGA1-202ENST00000347617 MED13Q9UHV7 2174 aa13.39□□□□□ -0.27
HMGA1-202ENST00000347617 ZNF891A8MT65 544 aaPredicted RBP13.38□□□□□ -0.27
HMGA1-202ENST00000347617 SYNGR4O95473 234 aa13.38□□□□□ -0.27
HMGA1-202ENST00000347617 IGKV1D-33P01593 117 aa13.38□□□□□ -0.27
HMGA1-202ENST00000347617 IGKV1-33P01594 117 aa13.38□□□□□ -0.27
HMGA1-202ENST00000347617 RPL29P47914 159 aaKnown RBP13.38□□□□□ -0.27
HMGA1-202ENST00000347617 CLDN18P56856 261 aa13.38□□□□□ -0.27
HMGA1-202ENST00000347617 PLGLB1Q02325 96 aa13.38□□□□□ -0.27
HMGA1-202ENST00000347617 TESK1Q15569 626 aa13.38□□□□□ -0.27
HMGA1-202ENST00000347617 ACSM6Q6P461 480 aa13.38□□□□□ -0.27
HMGA1-202ENST00000347617 AAED1Q7RTV5 226 aa13.38□□□□□ -0.27
HMGA1-202ENST00000347617 ZBTB34Q8NCN2 500 aa13.38□□□□□ -0.27
HMGA1-202ENST00000347617 OR5A2Q8NGI9 324 aa13.38□□□□□ -0.27
HMGA1-202ENST00000347617 RAB1CQ92928 201 aa13.38□□□□□ -0.27
HMGA1-202ENST00000347617 ZNF837Q96EG3 531 aaPredicted RBP13.38□□□□□ -0.27
HMGA1-202ENST00000347617 CIB3Q96Q77 187 aaPredicted RBP13.38□□□□□ -0.27
HMGA1-202ENST00000347617 ERRFI1Q9UJM3 462 aaPredicted RBP13.38□□□□□ -0.27
HMGA1-202ENST00000347617 HS3ST1O14792 307 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 MMP23AO75900 390 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 KRASP01116 189 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 EDN3P14138 238 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 ARG2P78540 354 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 ZNF766Q5HY98 468 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 ATP1A1-AS1Q5TC04 95 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 FAM180AQ6UWF9 173 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 LINC01551Q86U37 167 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 OR5P3Q8WZ94 311 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 GPHA2Q96T91 129 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 HES7Q9BYE0 225 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 OR51B6Q9H340 312 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 SLC25A22Q9H936 323 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 HSPB7Q9UBY9 170 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 C11orf94C9JXX5 98 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 YPEL1O60688 119 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 LILRA1O75019 489 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 CEACAM4O75871 244 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 B4GALT1P15291 398 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 MAGEA5P43359 124 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 VWC2Q2TAL6 325 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 FFAR4Q5NUL3 377 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 COL5A1-AS1Q5SY13 56 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 NUFIP2Q7Z417 695 aaKnown RBP13.37□□□□□ -0.27
HMGA1-202ENST00000347617 VASH2Q86V25 355 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 ARL6IP6Q8N6S5 226 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 YPEL2Q96QA6 119 aa13.37□□□□□ -0.27
HMGA1-202ENST00000347617 ZNF292O60281 2723 aa13.36□□□□□ -0.27
HMGA1-202ENST00000347617 MDFIC2A0A1B0GVS7 189 aa13.36□□□□□ -0.27
HMGA1-202ENST00000347617 PAGE4O60829 102 aa13.36□□□□□ -0.27
HMGA1-202ENST00000347617 BRS3P32247 399 aa13.36□□□□□ -0.27
HMGA1-202ENST00000347617 ASCL5Q7RTU5 278 aa13.36□□□□□ -0.27
HMGA1-202ENST00000347617 ELOVL5Q9NYP7 299 aa13.36□□□□□ -0.27
HMGA1-202ENST00000347617 CNTRLQ7Z7A1 2325 aa13.36□□□□□ -0.27
HMGA1-202ENST00000347617 MED12Q93074 2177 aa13.36□□□□□ -0.27
HMGA1-202ENST00000347617 TRBV9A0A0B4J1U6 114 aa13.35□□□□□ -0.27
HMGA1-202ENST00000347617 CLDN1O95832 211 aa13.35□□□□□ -0.27
HMGA1-202ENST00000347617 RPL19P84098 196 aaKnown RBP13.35□□□□□ -0.27
HMGA1-202ENST00000347617 TCTEX1D1Q8N7M0 179 aa13.35□□□□□ -0.27
HMGA1-202ENST00000347617 OR10P1Q8NGE3 313 aa13.35□□□□□ -0.27
HMGA1-202ENST00000347617 OR4B1Q8NGF8 309 aa13.35□□□□□ -0.27
HMGA1-202ENST00000347617 OR56B2PQ8NGI1 322 aa13.35□□□□□ -0.27
HMGA1-202ENST00000347617 VAMP8Q9BV40 100 aa13.35□□□□□ -0.27
HMGA1-202ENST00000347617 LINC00470Q9BZP3 86 aa13.35□□□□□ -0.27
HMGA1-202ENST00000347617 ZDHHC11Q9H8X9 412 aa13.35□□□□□ -0.27
HMGA1-202ENST00000347617 MTCH1Q9NZJ7 389 aa13.35□□□□□ -0.27
HMGA1-202ENST00000347617 CDC34P49427 236 aaPredicted RBP13.35□□□□□ -0.27
HMGA1-202ENST00000347617 CEACAM16Q2WEN9 425 aa13.35□□□□□ -0.27
HMGA1-202ENST00000347617 ZNF585BQ52M93 769 aa13.35□□□□□ -0.27
HMGA1-202ENST00000347617 TOMM20LQ6UXN7 152 aa13.35□□□□□ -0.27
HMGA1-202ENST00000347617 OR2J1Q9GZK6 312 aa13.35□□□□□ -0.27
HMGA1-202ENST00000347617 LPAR2Q9HBW0 351 aa13.35□□□□□ -0.27
HMGA1-202ENST00000347617 CFAP54Q96N23 3096 aa13.34□□□□□ -0.27
HMGA1-202ENST00000347617 OR5B21A6NL26 309 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms