RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SNRPCP09234 159 aaKnown RBP14.94□□□□□ -0.02
SYNPO-201ENST00000307662 HOXB1P14653 301 aaPredicted RBP14.94□□□□□ -0.02
SYNPO-201ENST00000307662 HOXA5P20719 270 aa14.94□□□□□ -0.02
SYNPO-201ENST00000307662 PGPA6NDG6 321 aa14.94□□□□□ -0.02
SYNPO-201ENST00000307662 K7N7A8 449 aa14.94□□□□□ -0.02
SYNPO-201ENST00000307662 MSGN1A6NI15 193 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 MGST3O14880 152 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 NUBP1P53384 320 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 TPRX1Q8N7U7 411 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 TMEM136Q6ZRR5 245 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 GPHA2Q96T91 129 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 HIST1H4GQ99525 98 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 DLL1O00548 723 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 RAB1BQ9H0U4 201 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 WDR54Q9H977 334 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 LCN2P80188 198 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 ZNF818PQ6ZRF7 136 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 LRRC37AA6NMS7 1700 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 TRPM6Q9BX84 2022 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 A0A1W2PQF6 199 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 ZG16O60844 167 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 CRYBB3P26998 211 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 TMEM177Q53S58 311 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 DMRTA1Q5VZB9 504 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 OR10AG1Q8NH19 301 aa14.93□□□□□ -0.02
SYNPO-201ENST00000307662 DPRXA6NFQ7 191 aa14.92□□□□□ -0.02
SYNPO-201ENST00000307662 REG1BP48304 166 aa14.92□□□□□ -0.02
SYNPO-201ENST00000307662 MTURNQ8N3F0 131 aa14.92□□□□□ -0.02
SYNPO-201ENST00000307662 R4GN57 208 aa14.92□□□□□ -0.02
SYNPO-201ENST00000307662 IGKV1D-42A0A075B6H8 117 aa14.92□□□□□ -0.02
SYNPO-201ENST00000307662 A0A087WWC5 75 aa14.92□□□□□ -0.02
SYNPO-201ENST00000307662 COX6CP09669 75 aa14.92□□□□□ -0.02
SYNPO-201ENST00000307662 PEF1Q9UBV8 284 aaKnown RBP14.92□□□□□ -0.02
SYNPO-201ENST00000307662 GREM1O60565 184 aa14.92□□□□□ -0.02
SYNPO-201ENST00000307662 TMEM70Q9BUB7 260 aa14.92□□□□□ -0.02
SYNPO-201ENST00000307662 RNF222A6NCQ9 220 aa14.92□□□□□ -0.02
SYNPO-201ENST00000307662 C8orf88P0DMB2 117 aa14.92□□□□□ -0.02
SYNPO-201ENST00000307662 HERPUD1Q15011 391 aa14.92□□□□□ -0.02
SYNPO-201ENST00000307662 TMUB1Q9BVT8 246 aa14.92□□□□□ -0.02
SYNPO-201ENST00000307662 ZNF430Q9H8G1 570 aaPredicted RBP14.92□□□□□ -0.02
SYNPO-201ENST00000307662 FHL5Q5TD97 284 aa14.91□□□□□ -0.02
SYNPO-201ENST00000307662 GCSAMQ8N6F7 178 aa14.91□□□□□ -0.02
SYNPO-201ENST00000307662 C4orf51C9J302 202 aa14.91□□□□□ -0.02
SYNPO-201ENST00000307662 SRP19P09132 144 aaKnown RBP14.91□□□□□ -0.02
SYNPO-201ENST00000307662 CBLN1P23435 193 aa14.91□□□□□ -0.02
SYNPO-201ENST00000307662 SNAI3Q3KNW1 292 aa14.91□□□□□ -0.02
SYNPO-201ENST00000307662 ANKRD31Q8N7Z5 1873 aa14.91□□□□□ -0.02
SYNPO-201ENST00000307662 DLL3Q9NYJ7 618 aa14.91□□□□□ -0.02
SYNPO-201ENST00000307662 NPIPB7O75200 414 aa14.91□□□□□ -0.02
SYNPO-201ENST00000307662 SAXO1Q8IYX7 474 aa14.91□□□□□ -0.02
SYNPO-201ENST00000307662 MAP1LC3AQ9H492 121 aa14.91□□□□□ -0.02
SYNPO-201ENST00000307662 TUBA4BQ9H853 241 aa14.91□□□□□ -0.02
SYNPO-201ENST00000307662 SLC25A10Q9UBX3 287 aaPredicted RBP14.91□□□□□ -0.02
SYNPO-201ENST00000307662 IGHV5-10-1A0A0J9YXX1 117 aa14.9□□□□□ -0.02
SYNPO-201ENST00000307662 KLF4O43474 513 aa14.9□□□□□ -0.02
SYNPO-201ENST00000307662 CCL4P13236 92 aa14.9□□□□□ -0.02
SYNPO-201ENST00000307662 SSTR5P35346 364 aa14.9□□□□□ -0.02
SYNPO-201ENST00000307662 HEXA-AS1Q9H8Q6 139 aa14.9□□□□□ -0.02
SYNPO-201ENST00000307662 ZNF831Q5JPB2 1677 aa14.9□□□□□ -0.02
SYNPO-201ENST00000307662 PLAUP00749 431 aa14.9□□□□□ -0.02
SYNPO-201ENST00000307662 CD3EP07766 207 aa14.9□□□□□ -0.02
SYNPO-201ENST00000307662 RPL27AP46776 148 aaKnown RBP14.9□□□□□ -0.02
SYNPO-201ENST00000307662 MMDQ15546 238 aa14.9□□□□□ -0.02
SYNPO-201ENST00000307662 ZCCHC14Q8WYQ9 949 aaKnown RBP14.9□□□□□ -0.02
SYNPO-201ENST00000307662 SPAG17Q6Q759 2223 aa14.9□□□□□ -0.02
SYNPO-201ENST00000307662 TRAV14DV4A0A0A6YYC5 116 aa14.9□□□□□ -0.02
SYNPO-201ENST00000307662 IGHMP01871 453 aa14.9□□□□□ -0.02
SYNPO-201ENST00000307662 RPL31P62899 125 aaKnown RBP14.9□□□□□ -0.02
SYNPO-201ENST00000307662 PKIBQ9C010 78 aa14.9□□□□□ -0.02
SYNPO-201ENST00000307662 KRTCAP3Q53RY4 240 aa14.9□□□□□ -0.02
SYNPO-201ENST00000307662 WDYHV1Q96HA8 205 aa14.9□□□□□ -0.02
SYNPO-201ENST00000307662 DNAJC4Q9NNZ3 241 aa14.9□□□□□ -0.02
SYNPO-201ENST00000307662 RPRMQ9NS64 109 aa14.9□□□□□ -0.02
SYNPO-201ENST00000307662 F2RL2O00254 374 aa14.89□□□□□ -0.03
SYNPO-201ENST00000307662 RCC1LQ96I51 464 aaKnown RBP14.89□□□□□ -0.03
SYNPO-201ENST00000307662 KCNMB1Q16558 191 aa14.89□□□□□ -0.03
SYNPO-201ENST00000307662 C1orf210Q8IVY1 113 aa14.89□□□□□ -0.03
SYNPO-201ENST00000307662 F11RQ9Y624 299 aaKnown RBP14.89□□□□□ -0.03
SYNPO-201ENST00000307662 MARCH11A6NNE9 402 aa14.89□□□□□ -0.03
SYNPO-201ENST00000307662 H7C2G1 150 aa14.89□□□□□ -0.03
SYNPO-201ENST00000307662 C1orf174Q8IYL3 243 aa14.89□□□□□ -0.03
SYNPO-201ENST00000307662 CALHM1Q8IU99 346 aa14.89□□□□□ -0.03
SYNPO-201ENST00000307662 C19orf24Q9BVV8 132 aa14.89□□□□□ -0.03
SYNPO-201ENST00000307662 AUP1Q9Y679 476 aa14.89□□□□□ -0.03
SYNPO-201ENST00000307662 FAM90A27PA6NNH2 459 aa14.88□□□□□ -0.03
SYNPO-201ENST00000307662 RPL8P62917 257 aaKnown RBP14.88□□□□□ -0.03
SYNPO-201ENST00000307662 MESP2Q0VG99 397 aa14.88□□□□□ -0.03
SYNPO-201ENST00000307662 KLK10O43240 276 aa14.88□□□□□ -0.03
SYNPO-201ENST00000307662 BTCP35070 178 aa14.88□□□□□ -0.03
SYNPO-201ENST00000307662 MPV17P39210 176 aa14.88□□□□□ -0.03
SYNPO-201ENST00000307662 HSPE1P61604 102 aaKnown RBP14.88□□□□□ -0.03
SYNPO-201ENST00000307662 SFXN3Q9BWM7 321 aa14.88□□□□□ -0.03
SYNPO-201ENST00000307662 PLXNB2O15031 1838 aa14.88□□□□□ -0.03
SYNPO-201ENST00000307662 NPBWR2P48146 333 aa14.88□□□□□ -0.03
SYNPO-201ENST00000307662 ZXDCQ2QGD7 858 aaPredicted RBP14.88□□□□□ -0.03
SYNPO-201ENST00000307662 TTC32Q5I0X7 151 aa14.88□□□□□ -0.03
SYNPO-201ENST00000307662 CYP2G1PQ6ZSU1 146 aa14.88□□□□□ -0.03
SYNPO-201ENST00000307662 NEU1Q99519 415 aa14.88□□□□□ -0.03
SYNPO-201ENST00000307662 AKIRIN1Q9H9L7 192 aaPredicted RBP14.88□□□□□ -0.03
SYNPO-201ENST00000307662 S1PR2O95136 353 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms