RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 PLEK2Q9NYT0 353 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 LOC102725191A0A1B0GVB3 256 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 SHISA7A6NL88 538 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 H0Y8G0 127 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 K7EP34 96 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 RHBDL1O75783 438 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 CLDN1O95832 211 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 CRYGCP07315 174 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 POU3F1Q03052 451 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-213ENST00000636759 ZAR1Q86SH2 424 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 HAPLN4Q86UW8 402 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 RPP25Q9BUL9 199 aaKnown RBP5.84□□□□□ -1.47
SCN1A-213ENST00000636759 OR1A2Q9Y585 309 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 SPACA6W5XKT8 324 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 MPDZO75970 2070 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 A6NDN8 102 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 SLC22A20A6NK97 555 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 C1QTNF9BB2RNN3 333 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 KLRC4-KLRK1H3BQV0 150 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 H3BUT2 72 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 LIPFP07098 398 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 LINC00869P0C866 280 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 PNMTP11086 282 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 ZNF17P17021 662 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 UBE2G1P62253 170 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 ZP4Q12836 540 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 PLCXD3Q63HM9 321 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 FA2HQ7L5A8 372 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 OR4A5Q8NH83 315 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 FER1L6-AS2Q96M78 137 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 TIMM29Q9BSF4 260 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 ULBP2Q9BZM5 246 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 MMP25Q9NPA2 562 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 MCTS1Q9ULC4 181 aaKnown RBP5.84□□□□□ -1.47
SCN1A-213ENST00000636759 DAPP1Q9UN19 280 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 MUC3AQ02505 3323 aa5.84□□□□□ -1.47
SCN1A-213ENST00000636759 CTXND1A0A1B0GTU2 59 aa5.84□□□□□ -1.48
SCN1A-213ENST00000636759 A0A1W2PQF6 199 aa5.84□□□□□ -1.48
SCN1A-213ENST00000636759 M0R2Z0 102 aa5.84□□□□□ -1.48
SCN1A-213ENST00000636759 CEACAM5P06731 702 aa5.84□□□□□ -1.48
SCN1A-213ENST00000636759 ADH4P08319 380 aa5.84□□□□□ -1.48
SCN1A-213ENST00000636759 CPMP14384 443 aa5.84□□□□□ -1.48
SCN1A-213ENST00000636759 SEC11AP67812 179 aa5.84□□□□□ -1.48
SCN1A-213ENST00000636759 HIST1H1AQ02539 215 aaPredicted RBP5.84□□□□□ -1.48
SCN1A-213ENST00000636759 KIAA1644Q3SXP7 199 aa5.84□□□□□ -1.48
SCN1A-213ENST00000636759 OR10AG1Q8NH19 301 aa5.84□□□□□ -1.48
SCN1A-213ENST00000636759 BLNKQ8WV28 456 aa5.84□□□□□ -1.48
SCN1A-213ENST00000636759 NPFFR1Q9GZQ6 430 aa5.84□□□□□ -1.48
SCN1A-213ENST00000636759 RARRES3Q9UL19 164 aa5.84□□□□□ -1.48
SCN1A-213ENST00000636759 SPCS1Q9Y6A9 102 aa5.84□□□□□ -1.48
SCN1A-213ENST00000636759 KIAA0100Q14667 2235 aaKnown RBP5.83□□□□□ -1.48
SCN1A-213ENST00000636759 IGKV1D-8A0A087WSZ0 117 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 SAA2-SAA4A0A096LPE2 208 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 C3orf85A0A1B0GTC6 90 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 ISLRO14498 428 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 NPY1RP25929 384 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 SRIP30626 198 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 PPOXP50336 477 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 COLCA1Q6ZS62 124 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 LINC00470Q9BZP3 86 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 PGPEP1Q9NXJ5 209 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 HS3ST3A1Q9Y663 406 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 SPAG17Q6Q759 2223 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 TEX48A0A1B0GUV7 120 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 A0A1W2PP55 124 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 PRSS37A4D1T9 235 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 DEGS1O15121 323 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 MLNRO43193 412 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 ANGPTL7O43827 346 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 EGR1P18146 543 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 RPS21P63220 83 aaKnown RBP5.83□□□□□ -1.48
SCN1A-213ENST00000636759 COX19Q49B96 90 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 TMEM196Q5HYL7 178 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-213ENST00000636759 LINC00346Q8IVM7 164 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 OR10G3Q8NGC4 313 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 NT5CQ8TCD5 201 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 OR5P3Q8WZ94 311 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 PERPQ96FX8 193 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 IL36BQ9NZH7 164 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 KIAA2026Q5HYC2 2103 aa5.83□□□□□ -1.48
SCN1A-213ENST00000636759 PRRC2BQ5JSZ5 2229 aaKnown RBP5.82□□□□□ -1.48
SCN1A-213ENST00000636759 SPAARA0A1B0GVQ0 90 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 OR4C46A6NHA9 309 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 TNRC18O15417 2968 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-213ENST00000636759 NDUFB4O95168 129 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 IFI6P09912 130 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 HTR1DP28221 377 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 CDCP2Q5VXM1 449 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 UFSP1Q6NVU6 142 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 ZNF841Q6ZN19 808 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 C6orf201Q7Z4U5 140 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 CACNG8Q8WXS5 425 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 C8orf44Q96CB5 159 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 RAB40CQ96S21 281 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 QTRT1Q9BXR0 403 aaKnown RBP5.82□□□□□ -1.48
SCN1A-213ENST00000636759 C11orf1Q9H5F2 150 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 IGFLR1Q9H665 355 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 HIF1ANQ9NWT6 349 aa5.82□□□□□ -1.48
SCN1A-213ENST00000636759 TRAPPC2LQ9UL33 140 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms