RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	ZNF880	Q6PDB4	577 aa		13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	MOB1B	Q7L9L4	216 aa		13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	SBSPON	Q8IVN8	264 aa		13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	OR6M1	Q8NGM8	313 aa		13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	GRPEL2	Q8TAA5	225 aa		13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	FBLIM1	Q8WUP2	373 aa		13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	URM1	Q9BTM9	101 aa	Known RBP	13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	LPAR5	Q9H1C0	372 aa		13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	GHITM	Q9H3K2	345 aa		13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	SCN3B	Q9NY72	215 aa		13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	ZNF221	Q9UK13	617 aa		13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	AK6	Q9Y3D8	172 aa	Known RBP	13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	NUBP2	Q9Y5Y2	271 aa		13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	RYR3	Q15413	4870 aa		13.59	□□□□□ -0.23
SHKBP1-223	ENST00000600552	SLC22A1	O15245	554 aa		13.58	□□□□□ -0.24
SHKBP1-223	ENST00000600552	CA2	P00918	260 aa		13.58	□□□□□ -0.24
SHKBP1-223	ENST00000600552	EGR2	P11161	476 aa	Predicted RBP	13.58	□□□□□ -0.24
SHKBP1-223	ENST00000600552	ARSB	P15848	533 aa		13.58	□□□□□ -0.24
SHKBP1-223	ENST00000600552	ZBTB25	P24278	435 aa		13.58	□□□□□ -0.24
SHKBP1-223	ENST00000600552	CD40LG	P29965	261 aa		13.58	□□□□□ -0.24
SHKBP1-223	ENST00000600552	VEGFC	P49767	419 aa		13.58	□□□□□ -0.24
SHKBP1-223	ENST00000600552	CLDN12	P56749	244 aa		13.58	□□□□□ -0.24
SHKBP1-223	ENST00000600552	HLA-DRB3	P79483	266 aa		13.58	□□□□□ -0.24
SHKBP1-223	ENST00000600552	QRFP	P83859	136 aa		13.58	□□□□□ -0.24
SHKBP1-223	ENST00000600552	PITPNA	Q00169	270 aa		13.58	□□□□□ -0.24
SHKBP1-223	ENST00000600552	PSG5	Q15238	335 aa		13.58	□□□□□ -0.24
SHKBP1-223	ENST00000600552	UFD1	Q92890	307 aa		13.58	□□□□□ -0.24
SHKBP1-223	ENST00000600552	OR4C12	Q96R67	309 aa		13.58	□□□□□ -0.24
SHKBP1-223	ENST00000600552	RSRP1	Q9BUV0	290 aa		13.58	□□□□□ -0.24
SHKBP1-223	ENST00000600552	VCX	Q9H320	206 aa		13.58	□□□□□ -0.24
SHKBP1-223	ENST00000600552	RIMS4	Q9H426	269 aa	Predicted RBP	13.58	□□□□□ -0.24
SHKBP1-223	ENST00000600552	TRIM64C	A6NLI5	447 aa		13.57	□□□□□ -0.24
SHKBP1-223	ENST00000600552	ANKRD65	E5RJM6	399 aa		13.57	□□□□□ -0.24
SHKBP1-223	ENST00000600552	TRGV3	P03979	118 aa		13.57	□□□□□ -0.24
SHKBP1-223	ENST00000600552	UCHL1	P09936	223 aa		13.57	□□□□□ -0.24
SHKBP1-223	ENST00000600552	GP9	P14770	177 aa		13.57	□□□□□ -0.24
SHKBP1-223	ENST00000600552	RPS25	P62851	125 aa	Known RBP	13.57	□□□□□ -0.24
SHKBP1-223	ENST00000600552	RAB11B	Q15907	218 aa		13.57	□□□□□ -0.24
SHKBP1-223	ENST00000600552	C19orf54	Q5BKX5	351 aa		13.57	□□□□□ -0.24
SHKBP1-223	ENST00000600552	OR5T1	Q8NG75	326 aa		13.57	□□□□□ -0.24
SHKBP1-223	ENST00000600552	OR6Q1	Q8NGQ2	317 aa		13.57	□□□□□ -0.24
SHKBP1-223	ENST00000600552	EDARADD	Q8WWZ3	215 aa		13.57	□□□□□ -0.24
SHKBP1-223	ENST00000600552	ARHGAP5-AS1	Q96IT6	56 aa		13.57	□□□□□ -0.24
SHKBP1-223	ENST00000600552	RCHY1	Q96PM5	261 aa		13.57	□□□□□ -0.24
SHKBP1-223	ENST00000600552	CMSS1	Q9BQ75	279 aa	Known RBP	13.57	□□□□□ -0.24
SHKBP1-223	ENST00000600552	LSM2	Q9Y333	95 aa	Known RBP	13.57	□□□□□ -0.24
SHKBP1-223	ENST00000600552	ANKRD34B	A5PLL1	514 aa		13.56	□□□□□ -0.24
SHKBP1-223	ENST00000600552	SLC25A17	O43808	307 aa		13.56	□□□□□ -0.24
SHKBP1-223	ENST00000600552	RBBP9	O75884	186 aa		13.56	□□□□□ -0.24
SHKBP1-223	ENST00000600552	CNIH1	O95406	144 aa		13.56	□□□□□ -0.24
SHKBP1-223	ENST00000600552	HSPB1	P04792	205 aa	Known RBP	13.56	□□□□□ -0.24
SHKBP1-223	ENST00000600552	FRMD6-AS1	P0C7T7	363 aa		13.56	□□□□□ -0.24
SHKBP1-223	ENST00000600552	FXYD3	Q14802	87 aa		13.56	□□□□□ -0.24
SHKBP1-223	ENST00000600552	TCTEX1D1	Q8N7M0	179 aa		13.56	□□□□□ -0.24
SHKBP1-223	ENST00000600552	FLYWCH2	Q96CP2	140 aa	Known RBP	13.56	□□□□□ -0.24
SHKBP1-223	ENST00000600552	TSNAX	Q99598	290 aa	Known RBP	13.56	□□□□□ -0.24
SHKBP1-223	ENST00000600552	GFI1	Q99684	422 aa		13.56	□□□□□ -0.24
SHKBP1-223	ENST00000600552	AGMAT	Q9BSE5	352 aa		13.56	□□□□□ -0.24
SHKBP1-223	ENST00000600552	PECR	Q9BY49	303 aa		13.56	□□□□□ -0.24
SHKBP1-223	ENST00000600552	CCDC90B	Q9GZT6	254 aa		13.56	□□□□□ -0.24
SHKBP1-223	ENST00000600552		Q9N2K0	584 aa		13.56	□□□□□ -0.24
SHKBP1-223	ENST00000600552	TPSG1	Q9NRR2	321 aa		13.56	□□□□□ -0.24
SHKBP1-223	ENST00000600552	C3orf84	H3BNL1	204 aa		13.55	□□□□□ -0.24
SHKBP1-223	ENST00000600552		M0R1X1	148 aa		13.55	□□□□□ -0.24
SHKBP1-223	ENST00000600552	APOA2	P02652	100 aa		13.55	□□□□□ -0.24
SHKBP1-223	ENST00000600552	IGKV1-16	P04430	117 aa		13.55	□□□□□ -0.24
SHKBP1-223	ENST00000600552	OR8U9	P0C7N5	309 aa		13.55	□□□□□ -0.24
SHKBP1-223	ENST00000600552	PYHIN1	Q6K0P9	492 aa		13.55	□□□□□ -0.24
SHKBP1-223	ENST00000600552	ACSM6	Q6P461	480 aa		13.55	□□□□□ -0.24
SHKBP1-223	ENST00000600552	ZNF383	Q8NA42	475 aa		13.55	□□□□□ -0.24
SHKBP1-223	ENST00000600552	OR5AN1	Q8NGI8	311 aa		13.55	□□□□□ -0.24
SHKBP1-223	ENST00000600552	C12orf4	Q9NQ89	552 aa		13.55	□□□□□ -0.24
SHKBP1-223	ENST00000600552	RDH8	Q9NYR8	311 aa		13.55	□□□□□ -0.24
SHKBP1-223	ENST00000600552	C13orf42	A0A1B0GVH6	325 aa		13.54	□□□□□ -0.24
SHKBP1-223	ENST00000600552	SLC17A2	O00624	439 aa		13.54	□□□□□ -0.24
SHKBP1-223	ENST00000600552	CASQ2	O14958	399 aa	Predicted RBP	13.54	□□□□□ -0.24
SHKBP1-223	ENST00000600552	TFAP2A	P05549	437 aa		13.54	□□□□□ -0.24
SHKBP1-223	ENST00000600552	CD3G	P09693	182 aa		13.54	□□□□□ -0.24
SHKBP1-223	ENST00000600552	CRIP2	P52943	208 aa	Predicted RBP	13.54	□□□□□ -0.24
SHKBP1-223	ENST00000600552	TMEM50B	P56557	158 aa		13.54	□□□□□ -0.24
SHKBP1-223	ENST00000600552	MRPS15	P82914	257 aa	Known RBP	13.54	□□□□□ -0.24
SHKBP1-223	ENST00000600552	DEFA5	Q01523	94 aa		13.54	□□□□□ -0.24
SHKBP1-223	ENST00000600552	AKIRIN2	Q53H80	203 aa		13.54	□□□□□ -0.24
SHKBP1-223	ENST00000600552	HES5	Q5TA89	166 aa		13.54	□□□□□ -0.24
SHKBP1-223	ENST00000600552	RNLS	Q5VYX0	342 aa		13.54	□□□□□ -0.24
SHKBP1-223	ENST00000600552	CD200R1L	Q6Q8B3	271 aa		13.54	□□□□□ -0.24
SHKBP1-223	ENST00000600552	ZNF562	Q6V9R5	426 aa		13.54	□□□□□ -0.24
SHKBP1-223	ENST00000600552	TMEM91	Q6ZNR0	172 aa		13.54	□□□□□ -0.24
SHKBP1-223	ENST00000600552	ELOVL1	Q9BW60	279 aa		13.54	□□□□□ -0.24
SHKBP1-223	ENST00000600552	SLC35D1	Q9NTN3	355 aa		13.54	□□□□□ -0.24
SHKBP1-223	ENST00000600552	MGAT4A	Q9UM21	535 aa		13.54	□□□□□ -0.24
SHKBP1-223	ENST00000600552	HUWE1	Q7Z6Z7	4374 aa	Known RBP	13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552		A0A075B6Q4	140 aa		13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552	TRBV6-6	A0A0A6YYG2	114 aa		13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552	IGKV1-6	A0A0C4DH72	117 aa		13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552	TRDC	B7Z8K6	153 aa		13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552	ITGB1BP1	O14713	200 aa		13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552	BET1	O15155	118 aa		13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552	PROP1	O75360	226 aa		13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552	CALR	P27797	417 aa	Known RBP	13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms