RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 HLA-DRB1P01911 266 aa12.72□□□□□ -0.37
TRIM28-213ENST00000598355 TALDO1P37837 337 aa12.72□□□□□ -0.37
TRIM28-213ENST00000598355 ALDH3B2P48448 385 aa12.72□□□□□ -0.37
TRIM28-213ENST00000598355 GNG2P59768 71 aa12.72□□□□□ -0.37
TRIM28-213ENST00000598355 CTF1Q16619 201 aa12.72□□□□□ -0.37
TRIM28-213ENST00000598355 CENPVQ7Z7K6 275 aaPredicted RBP12.72□□□□□ -0.37
TRIM28-213ENST00000598355 ANKRD13BQ86YJ7 626 aa12.72□□□□□ -0.37
TRIM28-213ENST00000598355 STPG2Q8N412 459 aa12.72□□□□□ -0.37
TRIM28-213ENST00000598355 OR4X2Q8NGF9 303 aa12.72□□□□□ -0.37
TRIM28-213ENST00000598355 RITA1Q96K30 269 aa12.72□□□□□ -0.37
TRIM28-213ENST00000598355 NOL4LQ96MY1 436 aaPredicted RBP12.72□□□□□ -0.37
TRIM28-213ENST00000598355 MRPS26Q9BYN8 205 aaKnown RBP12.72□□□□□ -0.37
TRIM28-213ENST00000598355 PSMB11A5LHX3 300 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 LINC01548A6NM66 108 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 NBR2O15453 112 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 RBBP9O75884 186 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 OPN1MWP04001 364 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 IGF1P05019 195 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 TFAP2AP05549 437 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 OPN1MW2P0DN77 364 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 OPN1MW3P0DN78 364 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 CNTFRP26992 372 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 MC5RP33032 325 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 VBP1P61758 197 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 CFHR3Q02985 330 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 C5orf64Q2M2E5 130 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 UBE2NLQ5JXB2 153 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 FOXRED2Q8IWF2 684 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 ZNF383Q8NA42 475 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 RASL11BQ9BPW5 248 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 OR2D2Q9H210 308 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 AUNIPQ9H7T9 357 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 ZNF221Q9UK13 617 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 WASHC3Q9Y3C0 194 aa12.71□□□□□ -0.37
TRIM28-213ENST00000598355 TNCP24821 2201 aa12.7□□□□□ -0.38
TRIM28-213ENST00000598355 TRAV18A0A075B6X5 111 aa12.7□□□□□ -0.38
TRIM28-213ENST00000598355 XRCC3O43542 346 aa12.7□□□□□ -0.38
TRIM28-213ENST00000598355 CTXN2P0C2S0 81 aa12.7□□□□□ -0.38
TRIM28-213ENST00000598355 SOX6P35712 828 aa12.7□□□□□ -0.38
TRIM28-213ENST00000598355 CNIH2Q6PI25 160 aa12.7□□□□□ -0.38
TRIM28-213ENST00000598355 GLDNQ6ZMI3 551 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-213ENST00000598355 COMMD1Q8N668 190 aa12.7□□□□□ -0.38
TRIM28-213ENST00000598355 RNF152Q8N8N0 203 aa12.7□□□□□ -0.38
TRIM28-213ENST00000598355 RNF5Q99942 180 aa12.7□□□□□ -0.38
TRIM28-213ENST00000598355 NAA50Q9GZZ1 169 aaKnown RBP12.7□□□□□ -0.38
TRIM28-213ENST00000598355 DIABLOQ9NR28 239 aa12.7□□□□□ -0.38
TRIM28-213ENST00000598355 SDHAF2Q9NX18 166 aa12.7□□□□□ -0.38
TRIM28-213ENST00000598355 ZNF107Q9UII5 783 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-213ENST00000598355 ANXA10Q9UJ72 324 aa12.7□□□□□ -0.38
TRIM28-213ENST00000598355 RNF150Q9ULK6 438 aa12.7□□□□□ -0.38
TRIM28-213ENST00000598355 TSSC4Q9Y5U2 329 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-213ENST00000598355 TUSC2O75896 110 aa12.69□□□□□ -0.38
TRIM28-213ENST00000598355 OR8U9P0C7N5 309 aa12.69□□□□□ -0.38
TRIM28-213ENST00000598355 CRIP2P52943 208 aaPredicted RBP12.69□□□□□ -0.38
TRIM28-213ENST00000598355 NSUN5P1Q3KNT7 163 aa12.69□□□□□ -0.38
TRIM28-213ENST00000598355 PDPNQ86YL7 162 aa12.69□□□□□ -0.38
TRIM28-213ENST00000598355 OR4F17Q8NGA8 305 aa12.69□□□□□ -0.38
TRIM28-213ENST00000598355 OR8U1Q8NH10 309 aa12.69□□□□□ -0.38
TRIM28-213ENST00000598355 OR4F4Q96R69 305 aa12.69□□□□□ -0.38
TRIM28-213ENST00000598355 GINS4Q9BRT9 223 aa12.69□□□□□ -0.38
TRIM28-213ENST00000598355 ST6GALNAC5Q9BVH7 336 aa12.69□□□□□ -0.38
TRIM28-213ENST00000598355 ANAPC10Q9UM13 185 aa12.69□□□□□ -0.38
TRIM28-213ENST00000598355 IGHV7-81A0A0B4J1V7 117 aa12.68□□□□□ -0.38
TRIM28-213ENST00000598355 M0R1X1 148 aa12.68□□□□□ -0.38
TRIM28-213ENST00000598355 RRHO14718 337 aa12.68□□□□□ -0.38
TRIM28-213ENST00000598355 SPDEFO95238 335 aa12.68□□□□□ -0.38
TRIM28-213ENST00000598355 IGKV1-16P04430 117 aa12.68□□□□□ -0.38
TRIM28-213ENST00000598355 LINC00205P59089 165 aa12.68□□□□□ -0.38
TRIM28-213ENST00000598355 ZNF329Q86UD4 541 aa12.68□□□□□ -0.38
TRIM28-213ENST00000598355 HOGA1Q86XE5 327 aa12.68□□□□□ -0.38
TRIM28-213ENST00000598355 SAMD12Q8N8I0 201 aa12.68□□□□□ -0.38
TRIM28-213ENST00000598355 DRAXINQ8NBI3 349 aaPredicted RBP12.68□□□□□ -0.38
TRIM28-213ENST00000598355 FAM110DQ8TAY7 271 aaPredicted RBP12.68□□□□□ -0.38
TRIM28-213ENST00000598355 DDB2Q92466 427 aa12.68□□□□□ -0.38
TRIM28-213ENST00000598355 CMTM3Q96MX0 182 aa12.68□□□□□ -0.38
TRIM28-213ENST00000598355 LINC00527Q9UJ94 153 aa12.68□□□□□ -0.38
TRIM28-213ENST00000598355 OR2W1Q9Y3N9 320 aa12.68□□□□□ -0.38
TRIM28-213ENST00000598355 TCRBV4S1A1TA0A5B7 111 aa12.67□□□□□ -0.38
TRIM28-213ENST00000598355 HLA-DQB1P01920 261 aa12.67□□□□□ -0.38
TRIM28-213ENST00000598355 SLC35B1P78383 322 aa12.67□□□□□ -0.38
TRIM28-213ENST00000598355 NDPQ00604 133 aa12.67□□□□□ -0.38
TRIM28-213ENST00000598355 C19orf54Q5BKX5 351 aa12.67□□□□□ -0.38
TRIM28-213ENST00000598355 GVQW1Q8N7I0 195 aa12.67□□□□□ -0.38
TRIM28-213ENST00000598355 BEST4Q8NFU0 473 aa12.67□□□□□ -0.38
TRIM28-213ENST00000598355 SNAPC3Q92966 411 aa12.67□□□□□ -0.38
TRIM28-213ENST00000598355 GON7Q9BXV9 100 aa12.67□□□□□ -0.38
TRIM28-213ENST00000598355 KIAA1456Q9P272 454 aa12.67□□□□□ -0.38
TRIM28-213ENST00000598355 IGLV2-14P01704 120 aa12.66□□□□□ -0.38
TRIM28-213ENST00000598355 IGHG4P01861 327 aa12.66□□□□□ -0.38
TRIM28-213ENST00000598355 APOA1P02647 267 aa12.66□□□□□ -0.38
TRIM28-213ENST00000598355 APOA2P02652 100 aa12.66□□□□□ -0.38
TRIM28-213ENST00000598355 EIF4EP06730 217 aaKnown RBP12.66□□□□□ -0.38
TRIM28-213ENST00000598355 PTHLHP12272 177 aa12.66□□□□□ -0.38
TRIM28-213ENST00000598355 DUTP33316 252 aaKnown RBP12.66□□□□□ -0.38
TRIM28-213ENST00000598355 CBX5P45973 191 aa12.66□□□□□ -0.38
TRIM28-213ENST00000598355 TAS2R20P59543 309 aa12.66□□□□□ -0.38
TRIM28-213ENST00000598355 RPL23AP62750 156 aaKnown RBP12.66□□□□□ -0.38
TRIM28-213ENST00000598355 TAGLNQ01995 201 aaKnown RBP12.66□□□□□ -0.38
TRIM28-213ENST00000598355 ZNF645Q8N7E2 425 aa12.66□□□□□ -0.38
TRIM28-213ENST00000598355 MYOZ3Q8TDC0 251 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms