RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 VMO1Q7Z5L0 202 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 CADM3Q8N126 398 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 LGI3Q8N145 548 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 PNKDQ8N490 385 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 OR52B4Q8NGK2 314 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 PCGF1Q9BSM1 259 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 SIRPDQ9H106 197 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 FAM212BQ9NTI7 297 aaPredicted RBP12.45□□□□□ -0.42
TRIM28-209ENST00000597423 A0A0B4J293 547 aa12.44□□□□□ -0.42
TRIM28-209ENST00000597423 J3QLI3 93 aa12.44□□□□□ -0.42
TRIM28-209ENST00000597423 PFDN1O60925 122 aa12.44□□□□□ -0.42
TRIM28-209ENST00000597423 ATG12O94817 140 aa12.44□□□□□ -0.42
TRIM28-209ENST00000597423 HTR1DP28221 377 aa12.44□□□□□ -0.42
TRIM28-209ENST00000597423 THBS3P49746 956 aa12.44□□□□□ -0.42
TRIM28-209ENST00000597423 RRAS2P62070 204 aaPredicted RBP12.44□□□□□ -0.42
TRIM28-209ENST00000597423 SUPT4H1P63272 117 aaKnown RBP12.44□□□□□ -0.42
TRIM28-209ENST00000597423 OR51H1Q8NH63 302 aa12.44□□□□□ -0.42
TRIM28-209ENST00000597423 CHAC2Q8WUX2 184 aa12.44□□□□□ -0.42
TRIM28-209ENST00000597423 TCTEX1D2Q8WW35 142 aa12.44□□□□□ -0.42
TRIM28-209ENST00000597423 SIRT7Q9NRC8 400 aa12.44□□□□□ -0.42
TRIM28-209ENST00000597423 AUP1Q9Y679 476 aa12.44□□□□□ -0.42
TRIM28-209ENST00000597423 FBN2P35556 2912 aa12.44□□□□□ -0.42
TRIM28-209ENST00000597423 A0A096LNT2 108 aa12.43□□□□□ -0.42
TRIM28-209ENST00000597423 SAA2-SAA4A0A096LPE2 208 aa12.43□□□□□ -0.42
TRIM28-209ENST00000597423 LEUTXA8MZ59 168 aa12.43□□□□□ -0.42
TRIM28-209ENST00000597423 BUB1B-PAK6H3BSN5 160 aa12.43□□□□□ -0.42
TRIM28-209ENST00000597423 IFNA21P01568 189 aa12.43□□□□□ -0.42
TRIM28-209ENST00000597423 IGLV1-47P01700 117 aa12.43□□□□□ -0.42
TRIM28-209ENST00000597423 GAPDHP04406 335 aaKnown RBP12.43□□□□□ -0.42
TRIM28-209ENST00000597423 ARG1P05089 322 aa12.43□□□□□ -0.42
TRIM28-209ENST00000597423 OR5AC1P0C628 307 aa12.43□□□□□ -0.42
TRIM28-209ENST00000597423 SAA2P0DJI9 122 aaPredicted RBP12.43□□□□□ -0.42
TRIM28-209ENST00000597423 RPA2P15927 270 aa12.43□□□□□ -0.42
TRIM28-209ENST00000597423 UBE2E1P51965 193 aa12.43□□□□□ -0.42
TRIM28-209ENST00000597423 HLA-DRB5Q30154 266 aa12.43□□□□□ -0.42
TRIM28-209ENST00000597423 CYB5R2Q6BCY4 276 aa12.43□□□□□ -0.42
TRIM28-209ENST00000597423 LIAT1Q6ZQX7 453 aa12.43□□□□□ -0.42
TRIM28-209ENST00000597423 ZNF695Q8IW36 515 aa12.43□□□□□ -0.42
TRIM28-209ENST00000597423 TMEM222Q9H0R3 208 aa12.43□□□□□ -0.42
TRIM28-209ENST00000597423 C7orf69Q9H7B7 122 aa12.43□□□□□ -0.42
TRIM28-209ENST00000597423 HIF1ANQ9NWT6 349 aa12.43□□□□□ -0.42
TRIM28-209ENST00000597423 ABCA12Q86UK0 2595 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 TXNL1O43396 289 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 TGFAP01135 160 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 RRASP10301 218 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 MMP9P14780 707 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 DUTP33316 252 aaKnown RBP12.42□□□□□ -0.42
TRIM28-209ENST00000597423 ZNF137PP52743 207 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 EIF4EBP1Q13541 118 aaPredicted RBP12.42□□□□□ -0.42
TRIM28-209ENST00000597423 TMEM187Q14656 261 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 TMEM249Q2WGJ8 235 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 SP6Q3SY56 376 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 RPL39P5Q59GN2 51 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 MINOS1Q5TGZ0 78 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 ZNF833PQ6ZTB9 187 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 KRTAP1-3Q8IUG1 177 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 ODF3L1Q8IXM7 274 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 LRTM2Q8N967 370 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 IL22RA2Q969J5 263 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 AIFM2Q9BRQ8 373 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 RAB18Q9NP72 206 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 DPM3Q9P2X0 92 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 MINOS1-NBL1R4GNA1 71 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 DOCK11Q5JSL3 2073 aa12.42□□□□□ -0.42
TRIM28-209ENST00000597423 ANKRD17O75179 2603 aaKnown RBP12.41□□□□□ -0.42
TRIM28-209ENST00000597423 APCP25054 2843 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 DUXBA0A1W2PPF3 345 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 OOSP1A8MZH6 123 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 CDS2O95674 445 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 UCP1P25874 307 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 MC5RP33032 325 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 RTL8BQ17RB0 113 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 UTF1Q5T230 341 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 CCDC144NLQ6NUI1 221 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 TGIF2LXQ8IUE1 241 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 SPAG16Q8N0X2 631 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 GLYATL2Q8WU03 294 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 ASB13Q8WXK3 278 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 LHX4Q969G2 390 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 RPEQ96AT9 228 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 TMEM56Q96MV1 263 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 TP53RKQ96S44 253 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 TBX15Q96SF7 602 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 TMEM56-RWDD3S4R434 201 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 DSCAML1Q8TD84 2053 aa12.41□□□□□ -0.42
TRIM28-209ENST00000597423 RBFOX2O43251 390 aaKnown RBP eCLIP12.4□□□□□ -0.42
TRIM28-209ENST00000597423 APOA2P02652 100 aa12.4□□□□□ -0.42
TRIM28-209ENST00000597423 SULT1A3P0DMM9 295 aa12.4□□□□□ -0.42
TRIM28-209ENST00000597423 SULT1A4P0DMN0 295 aa12.4□□□□□ -0.42
TRIM28-209ENST00000597423 IGHV4-31P0DP07 118 aa12.4□□□□□ -0.42
TRIM28-209ENST00000597423 HLA-GP17693 338 aa12.4□□□□□ -0.42
TRIM28-209ENST00000597423 ARHGDIBP52566 201 aa12.4□□□□□ -0.42
TRIM28-209ENST00000597423 FCN2Q15485 313 aa12.4□□□□□ -0.42
TRIM28-209ENST00000597423 ANKRD55Q3KP44 614 aa12.4□□□□□ -0.42
TRIM28-209ENST00000597423 MIDNQ504T8 468 aa12.4□□□□□ -0.42
TRIM28-209ENST00000597423 AKAP14Q86UN6 197 aa12.4□□□□□ -0.42
TRIM28-209ENST00000597423 TEX29Q8N6K0 151 aa12.4□□□□□ -0.42
TRIM28-209ENST00000597423 WFDC11Q8NEX6 87 aa12.4□□□□□ -0.42
TRIM28-209ENST00000597423 ST6GALNAC6Q969X2 333 aa12.4□□□□□ -0.42
TRIM28-209ENST00000597423 MSI2Q96DH6 328 aaKnown RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms