RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 IFI27L2Q9H2X8 130 aa9.86□□□□□ -0.83
UPF1-203ENST00000594504 AUNIPQ9H7T9 357 aa9.86□□□□□ -0.83
UPF1-203ENST00000594504 OR1A1Q9P1Q5 309 aa9.86□□□□□ -0.83
UPF1-203ENST00000594504 COMMD3Q9UBI1 195 aa9.86□□□□□ -0.83
UPF1-203ENST00000594504 MOB4Q9Y3A3 225 aa9.86□□□□□ -0.83
UPF1-203ENST00000594504 DNAH3Q8TD57 4116 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 SSX5O60225 188 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 NOL3O60936 208 aaKnown RBP9.85□□□□□ -0.83
UPF1-203ENST00000594504 APOA1P02647 267 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 GSTT2P0CG29 244 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 GSTT2BP0CG30 244 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 ZNF182P17025 639 aaPredicted RBP9.85□□□□□ -0.83
UPF1-203ENST00000594504 TMEM11P17152 192 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 MZT2AQ6P582 158 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 C8orf86Q6ZUL3 223 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 MOB3BQ86TA1 216 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 ODF3L1Q8IXM7 274 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 IZUMO1Q8IYV9 350 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 C5orf56Q8N8D9 126 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 OR10J5Q8NHC4 309 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 MAFIPQ8WZ33 124 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 DUX3Q96PT4 197 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 ST6GALNAC5Q9BVH7 336 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 TOLLIPQ9H0E2 274 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 PARP12Q9H0J9 701 aaKnown RBP9.85□□□□□ -0.83
UPF1-203ENST00000594504 GHITMQ9H3K2 345 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 PIPOXQ9P0Z9 390 aa9.85□□□□□ -0.83
UPF1-203ENST00000594504 SAA2-SAA4A0A096LPE2 208 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 TRBV6-7A0A0A0MS04 114 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 IGHV3-72A0A0B4J1Y9 119 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 M0QZK8 103 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 RAB29O14966 203 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 BET1O15155 118 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 ST8SIA5O15466 376 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 IGKV1D-33P01593 117 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 IGKV1-33P01594 117 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 SAA2P0DJI9 122 aaPredicted RBP9.84□□□□□ -0.83
UPF1-203ENST00000594504 CD1BP29016 333 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 SOX6P35712 828 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 THBS3P49746 956 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 RPL23AP62750 156 aaKnown RBP9.84□□□□□ -0.83
UPF1-203ENST00000594504 EGFEM1PQ0D2K5 195 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 SPCS2Q15005 226 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 IGSF11Q5DX21 431 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 TMEM69Q5SWH9 247 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 FAM71F2Q6NXP2 309 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 ZNF833PQ6ZTB9 187 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 AGMATQ9BSE5 352 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 C11orf54Q9H0W9 315 aaPredicted RBP9.84□□□□□ -0.83
UPF1-203ENST00000594504 RDH8Q9NYR8 311 aa9.84□□□□□ -0.83
UPF1-203ENST00000594504 IGKV1D-8A0A087WSZ0 117 aa9.83□□□□□ -0.84
UPF1-203ENST00000594504 SMIM31A0A1B0GVY4 71 aa9.83□□□□□ -0.84
UPF1-203ENST00000594504 DUS4LO95620 317 aaKnown RBP9.83□□□□□ -0.84
UPF1-203ENST00000594504 EIF4EP06730 217 aaKnown RBP9.83□□□□□ -0.84
UPF1-203ENST00000594504 CTXN2P0C2S0 81 aa9.83□□□□□ -0.84
UPF1-203ENST00000594504 CBX5P45973 191 aa9.83□□□□□ -0.84
UPF1-203ENST00000594504 TAS2R20P59543 309 aa9.83□□□□□ -0.84
UPF1-203ENST00000594504 EBI3Q14213 229 aa9.83□□□□□ -0.84
UPF1-203ENST00000594504 ISOC1Q96CN7 298 aa9.83□□□□□ -0.84
UPF1-203ENST00000594504 S1PR3Q99500 378 aa9.83□□□□□ -0.84
UPF1-203ENST00000594504 GINS4Q9BRT9 223 aa9.83□□□□□ -0.84
UPF1-203ENST00000594504 ANXA10Q9UJ72 324 aa9.83□□□□□ -0.84
UPF1-203ENST00000594504 NUDT19A8MXV4 375 aa9.82□□□□□ -0.84
UPF1-203ENST00000594504 H3BMQ9 156 aa9.82□□□□□ -0.84
UPF1-203ENST00000594504 HPGDSO60760 199 aa9.82□□□□□ -0.84
UPF1-203ENST00000594504 ELK1P19419 428 aa9.82□□□□□ -0.84
UPF1-203ENST00000594504 OR3A3P47888 321 aa9.82□□□□□ -0.84
UPF1-203ENST00000594504 LSAMPQ13449 338 aa9.82□□□□□ -0.84
UPF1-203ENST00000594504 CNIH2Q6PI25 160 aa9.82□□□□□ -0.84
UPF1-203ENST00000594504 LCNL1Q6ZST4 164 aa9.82□□□□□ -0.84
UPF1-203ENST00000594504 SLC35E3Q7Z769 313 aa9.82□□□□□ -0.84
UPF1-203ENST00000594504 HOGA1Q86XE5 327 aa9.82□□□□□ -0.84
UPF1-203ENST00000594504 H1FOOQ8IZA3 346 aaPredicted RBP9.82□□□□□ -0.84
UPF1-203ENST00000594504 KLHL30-AS1Q8NEE0 82 aa9.82□□□□□ -0.84
UPF1-203ENST00000594504 BEST4Q8NFU0 473 aa9.82□□□□□ -0.84
UPF1-203ENST00000594504 OR2T10Q8NGZ9 312 aa9.82□□□□□ -0.84
UPF1-203ENST00000594504 CHPT1Q8WUD6 406 aa9.82□□□□□ -0.84
UPF1-203ENST00000594504 ABHD14BQ96IU4 210 aa9.82□□□□□ -0.84
UPF1-203ENST00000594504 EAF1Q96JC9 268 aaPredicted RBP9.82□□□□□ -0.84
UPF1-203ENST00000594504 ZNF251Q9BRH9 671 aa9.82□□□□□ -0.84
UPF1-203ENST00000594504 MRPL20Q9BYC9 149 aaKnown RBP9.82□□□□□ -0.84
UPF1-203ENST00000594504 CCDC59Q9P031 241 aaKnown RBP9.82□□□□□ -0.84
UPF1-203ENST00000594504 ZNF221Q9UK13 617 aa9.82□□□□□ -0.84
UPF1-203ENST00000594504 MOSP00540 346 aa9.81□□□□□ -0.84
UPF1-203ENST00000594504 IGHG2P01859 326 aa9.81□□□□□ -0.84
UPF1-203ENST00000594504 PTHLHP12272 177 aa9.81□□□□□ -0.84
UPF1-203ENST00000594504 MYCNOSP40205 109 aa9.81□□□□□ -0.84
UPF1-203ENST00000594504 CD69Q07108 199 aa9.81□□□□□ -0.84
UPF1-203ENST00000594504 RPL39P5Q59GN2 51 aa9.81□□□□□ -0.84
UPF1-203ENST00000594504 STPG2Q8N412 459 aa9.81□□□□□ -0.84
UPF1-203ENST00000594504 Q8N6K4 173 aa9.81□□□□□ -0.84
UPF1-203ENST00000594504 GVQW1Q8N7I0 195 aa9.81□□□□□ -0.84
UPF1-203ENST00000594504 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.81□□□□□ -0.84
UPF1-203ENST00000594504 DYNC2LI1Q8TCX1 351 aa9.81□□□□□ -0.84
UPF1-203ENST00000594504 P2RX4Q99571 388 aa9.81□□□□□ -0.84
UPF1-203ENST00000594504 NABP2Q9BQ15 211 aa9.81□□□□□ -0.84
UPF1-203ENST00000594504 ZFP57Q9NU63 452 aa9.81□□□□□ -0.84
UPF1-203ENST00000594504 CEPT1Q9Y6K0 416 aa9.81□□□□□ -0.84
UPF1-203ENST00000594504 NCBP2LA6PVI3 153 aaKnown RBP9.8□□□□□ -0.84
UPF1-203ENST00000594504 FAM25AB3EWG3 89 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms