RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 FAM71E2Q8N5Q1 922 aa16.35■□□□□ 0.21
TRIM47-204ENST00000587339 TCTEX1D1Q8N7M0 179 aa16.35■□□□□ 0.21
TRIM47-204ENST00000587339 CT45A3Q8NHU0 189 aa16.35■□□□□ 0.21
TRIM47-204ENST00000587339 RAB1CQ92928 201 aa16.35■□□□□ 0.21
TRIM47-204ENST00000587339 LINC00473A8K010 186 aa16.34■□□□□ 0.21
TRIM47-204ENST00000587339 RAMP3O60896 148 aa16.34■□□□□ 0.21
TRIM47-204ENST00000587339 PROP1O75360 226 aa16.34■□□□□ 0.21
TRIM47-204ENST00000587339 CDKN1AP38936 164 aa16.34■□□□□ 0.21
TRIM47-204ENST00000587339 LSM10Q969L4 123 aaKnown RBP16.34■□□□□ 0.21
TRIM47-204ENST00000587339 ARID1AO14497 2285 aa16.34■□□□□ 0.21
TRIM47-204ENST00000587339 A0A0G2JRQ6 117 aa16.33■□□□□ 0.21
TRIM47-204ENST00000587339 A0A1W2PPE3 182 aa16.33■□□□□ 0.21
TRIM47-204ENST00000587339 PPIHO43447 177 aaKnown RBP16.33■□□□□ 0.21
TRIM47-204ENST00000587339 IFNA7P01567 189 aa16.33■□□□□ 0.21
TRIM47-204ENST00000587339 RNF224P0DH78 156 aa16.33■□□□□ 0.21
TRIM47-204ENST00000587339 LPAR6P43657 344 aa16.33■□□□□ 0.21
TRIM47-204ENST00000587339 NKX2-1P43699 371 aaPredicted RBP16.33■□□□□ 0.21
TRIM47-204ENST00000587339 AQP10Q96PS8 301 aa16.33■□□□□ 0.21
TRIM47-204ENST00000587339 CHODLQ9H9P2 273 aa16.33■□□□□ 0.21
TRIM47-204ENST00000587339 MSGN1A6NI15 193 aa16.33■□□□□ 0.2
TRIM47-204ENST00000587339 C17orf98A8MV24 154 aa16.33■□□□□ 0.2
TRIM47-204ENST00000587339 BCL2L11O43521 198 aa16.33■□□□□ 0.2
TRIM47-204ENST00000587339 CFDP00746 253 aaPredicted RBP16.33■□□□□ 0.2
TRIM47-204ENST00000587339 DUTP33316 252 aaKnown RBP16.33■□□□□ 0.2
TRIM47-204ENST00000587339 GNG10P50151 68 aa16.33■□□□□ 0.2
TRIM47-204ENST00000587339 LINC00205P59089 165 aa16.33■□□□□ 0.2
TRIM47-204ENST00000587339 ERVFRD-1P60508 538 aa16.33■□□□□ 0.2
TRIM47-204ENST00000587339 RPL39P5Q59GN2 51 aa16.33■□□□□ 0.2
TRIM47-204ENST00000587339 SLC51BQ86UW2 128 aa16.33■□□□□ 0.2
TRIM47-204ENST00000587339 ZNF439Q8NDP4 499 aa16.33■□□□□ 0.2
TRIM47-204ENST00000587339 GPR146Q96CH1 333 aa16.33■□□□□ 0.2
TRIM47-204ENST00000587339 FAM212BQ9NTI7 297 aaPredicted RBP16.33■□□□□ 0.2
TRIM47-204ENST00000587339 POMT1Q9Y6A1 747 aa16.33■□□□□ 0.2
TRIM47-204ENST00000587339 TRBV23-1A0A0A0MS06 115 aa16.32■□□□□ 0.2
TRIM47-204ENST00000587339 A0A1B0GU03 582 aa16.32■□□□□ 0.2
TRIM47-204ENST00000587339 E5RGE8 158 aa16.32■□□□□ 0.2
TRIM47-204ENST00000587339 M0R1X1 148 aa16.32■□□□□ 0.2
TRIM47-204ENST00000587339 RAB29O14966 203 aa16.32■□□□□ 0.2
TRIM47-204ENST00000587339 GOSR1O95249 250 aa16.32■□□□□ 0.2
TRIM47-204ENST00000587339 SLC25A6P12236 298 aa16.32■□□□□ 0.2
TRIM47-204ENST00000587339 EPHA1P21709 976 aa16.32■□□□□ 0.2
TRIM47-204ENST00000587339 ZNF816Q0VGE8 651 aaPredicted RBP16.32■□□□□ 0.2
TRIM47-204ENST00000587339 EXOSC2Q13868 293 aaKnown RBP16.32■□□□□ 0.2
TRIM47-204ENST00000587339 ZNF841Q6ZN19 808 aa16.32■□□□□ 0.2
TRIM47-204ENST00000587339 GAB2Q9UQC2 676 aa16.32■□□□□ 0.2
TRIM47-204ENST00000587339 NSG2Q9Y328 171 aa16.32■□□□□ 0.2
TRIM47-204ENST00000587339 KLF2Q9Y5W3 355 aaPredicted RBP16.32■□□□□ 0.2
TRIM47-204ENST00000587339 DCHS2Q6V1P9 2916 aa16.32■□□□□ 0.2
TRIM47-204ENST00000587339 GPR37O15354 613 aa16.31■□□□□ 0.2
TRIM47-204ENST00000587339 IGKV1-5P01602 117 aa16.31■□□□□ 0.2
TRIM47-204ENST00000587339 BRWD1-AS2P59051 145 aa16.31■□□□□ 0.2
TRIM47-204ENST00000587339 LYG1Q8N1E2 194 aa16.31■□□□□ 0.2
TRIM47-204ENST00000587339 CD300LFQ8TDQ1 290 aa16.31■□□□□ 0.2
TRIM47-204ENST00000587339 RAB39BQ96DA2 213 aa16.31■□□□□ 0.2
TRIM47-204ENST00000587339 ARPC5LQ9BPX5 153 aa16.31■□□□□ 0.2
TRIM47-204ENST00000587339 MIOXQ9UGB7 285 aa16.31■□□□□ 0.2
TRIM47-204ENST00000587339 FLNCQ14315 2725 aa16.31■□□□□ 0.2
TRIM47-204ENST00000587339 ZNF462Q96JM2 2506 aa16.31■□□□□ 0.2
TRIM47-204ENST00000587339 DOPEY1Q5JWR5 2465 aa16.31■□□□□ 0.2
TRIM47-204ENST00000587339 SAA2-SAA4A0A096LPE2 208 aa16.31■□□□□ 0.2
TRIM47-204ENST00000587339 SAA2P0DJI9 122 aaPredicted RBP16.31■□□□□ 0.2
TRIM47-204ENST00000587339 TMEM33P57088 247 aa16.31■□□□□ 0.2
TRIM47-204ENST00000587339 TMEM155Q4W5P6 130 aa16.31■□□□□ 0.2
TRIM47-204ENST00000587339 CXorf66Q5JRM2 361 aaPredicted RBP16.31■□□□□ 0.2
TRIM47-204ENST00000587339 NCR3LG1Q68D85 454 aa16.31■□□□□ 0.2
TRIM47-204ENST00000587339 SLC25A48Q6ZT89 311 aaKnown RBP16.31■□□□□ 0.2
TRIM47-204ENST00000587339 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.31■□□□□ 0.2
TRIM47-204ENST00000587339 OR8B3Q8NGG8 313 aa16.31■□□□□ 0.2
TRIM47-204ENST00000587339 OR8B2Q96RD0 313 aa16.31■□□□□ 0.2
TRIM47-204ENST00000587339 COL12A1Q99715 3063 aa16.3■□□□□ 0.2
TRIM47-204ENST00000587339 ATG12O94817 140 aa16.3■□□□□ 0.2
TRIM47-204ENST00000587339 S1PR2O95136 353 aa16.3■□□□□ 0.2
TRIM47-204ENST00000587339 SPDEFO95238 335 aa16.3■□□□□ 0.2
TRIM47-204ENST00000587339 F12P00748 615 aaPredicted RBP16.3■□□□□ 0.2
TRIM47-204ENST00000587339 RPL12P30050 165 aaKnown RBP16.3■□□□□ 0.2
TRIM47-204ENST00000587339 NDUFA5Q16718 116 aa16.3■□□□□ 0.2
TRIM47-204ENST00000587339 IZUMO4Q1ZYL8 232 aa16.3■□□□□ 0.2
TRIM47-204ENST00000587339 NEIL1Q96FI4 390 aaPredicted RBP16.3■□□□□ 0.2
TRIM47-204ENST00000587339 ZC4H2Q9NQZ6 224 aa16.3■□□□□ 0.2
TRIM47-204ENST00000587339 UBQLN2Q9UHD9 624 aa16.3■□□□□ 0.2
TRIM47-204ENST00000587339 RCL1Q9Y2P8 373 aaKnown RBP16.3■□□□□ 0.2
TRIM47-204ENST00000587339 KRASP01116 189 aa16.29■□□□□ 0.2
TRIM47-204ENST00000587339 HKR1P10072 659 aa16.29■□□□□ 0.2
TRIM47-204ENST00000587339 POLR2GP62487 172 aaKnown RBP eCLIP16.29■□□□□ 0.2
TRIM47-204ENST00000587339 ID3Q02535 119 aa16.29■□□□□ 0.2
TRIM47-204ENST00000587339 Q6ZRM9 215 aa16.29■□□□□ 0.2
TRIM47-204ENST00000587339 ODF3L1Q8IXM7 274 aa16.29■□□□□ 0.2
TRIM47-204ENST00000587339 ZNF471Q9BX82 626 aaPredicted RBP16.29■□□□□ 0.2
TRIM47-204ENST00000587339 PLEKHA2Q9HB19 425 aa16.29■□□□□ 0.2
TRIM47-204ENST00000587339 CACNG5Q9UF02 275 aa16.29■□□□□ 0.2
TRIM47-204ENST00000587339 YLPM1P49750 1951 aaKnown RBP16.29■□□□□ 0.2
TRIM47-204ENST00000587339 F5H0A9 414 aaPredicted RBP16.29■□□□□ 0.2
TRIM47-204ENST00000587339 NDUFS7O75251 213 aa16.29■□□□□ 0.2
TRIM47-204ENST00000587339 PITX3O75364 302 aa16.29■□□□□ 0.2
TRIM47-204ENST00000587339 HTR2BP41595 481 aa16.29■□□□□ 0.2
TRIM47-204ENST00000587339 PRELID3BQ9Y3B1 194 aa16.29■□□□□ 0.2
TRIM47-204ENST00000587339 MMP24Q9Y5R2 645 aa16.29■□□□□ 0.2
TRIM47-204ENST00000587339 FCGR3BO75015 233 aa16.28■□□□□ 0.2
TRIM47-204ENST00000587339 NXPH3O95157 252 aa16.28■□□□□ 0.2
TRIM47-204ENST00000587339 PVALBP20472 110 aaPredicted RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms