RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 Q8N9W7 124 aa8.62□□□□□ -1.03
CLIP3-203ENST00000586457 DRAXINQ8NBI3 349 aaPredicted RBP8.62□□□□□ -1.03
CLIP3-203ENST00000586457 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.62□□□□□ -1.03
CLIP3-203ENST00000586457 TSNAXQ99598 290 aaKnown RBP8.62□□□□□ -1.03
CLIP3-203ENST00000586457 IFI27L2Q9H2X8 130 aa8.62□□□□□ -1.03
CLIP3-203ENST00000586457 ZFP57Q9NU63 452 aa8.62□□□□□ -1.03
CLIP3-203ENST00000586457 KCNK7Q9Y2U2 307 aa8.62□□□□□ -1.03
CLIP3-203ENST00000586457 TRBV6-7A0A0A0MS04 114 aa8.61□□□□□ -1.03
CLIP3-203ENST00000586457 A0A0A6YYH2 397 aa8.61□□□□□ -1.03
CLIP3-203ENST00000586457 TMEM235A6NFC5 223 aa8.61□□□□□ -1.03
CLIP3-203ENST00000586457 A6NJ64 397 aa8.61□□□□□ -1.03
CLIP3-203ENST00000586457 DIRAS3O95661 229 aa8.61□□□□□ -1.03
CLIP3-203ENST00000586457 CT45A6P0DMU7 189 aa8.61□□□□□ -1.03
CLIP3-203ENST00000586457 CT45A5P0DMU8 189 aa8.61□□□□□ -1.03
CLIP3-203ENST00000586457 CT45A7P0DMV0 189 aa8.61□□□□□ -1.03
CLIP3-203ENST00000586457 DEFA6Q01524 100 aa8.61□□□□□ -1.03
CLIP3-203ENST00000586457 TAGLNQ01995 201 aaKnown RBP8.61□□□□□ -1.03
CLIP3-203ENST00000586457 RTL8BQ17RB0 113 aa8.61□□□□□ -1.03
CLIP3-203ENST00000586457 GLDNQ6ZMI3 551 aaPredicted RBP8.61□□□□□ -1.03
CLIP3-203ENST00000586457 FLYWCH2Q96CP2 140 aaKnown RBP8.61□□□□□ -1.03
CLIP3-203ENST00000586457 RNF5Q99942 180 aa8.61□□□□□ -1.03
CLIP3-203ENST00000586457 OR2D2Q9H210 308 aa8.61□□□□□ -1.03
CLIP3-203ENST00000586457 PARP11Q9NR21 331 aa8.61□□□□□ -1.03
CLIP3-203ENST00000586457 PLSCR3Q9NRY6 295 aa8.61□□□□□ -1.03
CLIP3-203ENST00000586457 SPATA2Q9UM82 520 aa8.61□□□□□ -1.03
CLIP3-203ENST00000586457 J3QRK9 145 aa8.6□□□□□ -1.03
CLIP3-203ENST00000586457 SLC22A5O76082 557 aa8.6□□□□□ -1.03
CLIP3-203ENST00000586457 RRASP10301 218 aa8.6□□□□□ -1.03
CLIP3-203ENST00000586457 RPS19P39019 145 aaKnown RBP8.6□□□□□ -1.03
CLIP3-203ENST00000586457 LUMP51884 338 aaPredicted RBP8.6□□□□□ -1.03
CLIP3-203ENST00000586457 TMEM267Q0VDI3 215 aaPredicted RBP8.6□□□□□ -1.03
CLIP3-203ENST00000586457 C5orf64Q2M2E5 130 aa8.6□□□□□ -1.03
CLIP3-203ENST00000586457 CNIH2Q6PI25 160 aa8.6□□□□□ -1.03
CLIP3-203ENST00000586457 Q6ZPA2 131 aa8.6□□□□□ -1.03
CLIP3-203ENST00000586457 FAM71E2Q8N5Q1 922 aa8.6□□□□□ -1.03
CLIP3-203ENST00000586457 NUDCD2Q8WVJ2 157 aa8.6□□□□□ -1.03
CLIP3-203ENST00000586457 YIPF6Q96EC8 236 aa8.6□□□□□ -1.03
CLIP3-203ENST00000586457 AGMATQ9BSE5 352 aa8.6□□□□□ -1.03
CLIP3-203ENST00000586457 DCUN1D5Q9BTE7 237 aa8.6□□□□□ -1.03
CLIP3-203ENST00000586457 FUNDC2Q9BWH2 189 aa8.6□□□□□ -1.03
CLIP3-203ENST00000586457 PARP12Q9H0J9 701 aaKnown RBP8.6□□□□□ -1.03
CLIP3-203ENST00000586457 IFT46Q9NQC8 304 aa8.6□□□□□ -1.03
CLIP3-203ENST00000586457 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.6□□□□□ -1.03
CLIP3-203ENST00000586457 SLC35D1Q9NTN3 355 aa8.6□□□□□ -1.03
CLIP3-203ENST00000586457 IGKV1-6A0A0C4DH72 117 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 LINC01548A6NM66 108 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 H0YJW9 148 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 RRHO14718 337 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 SHOXO15266 292 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 CNIH1O95406 144 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 SLC6A1P30531 599 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 CBX5P45973 191 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 THBS3P49746 956 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 ZNF260Q3ZCT1 412 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 UBE2NLQ5JXB2 153 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 TMEM69Q5SWH9 247 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 C10orf99Q6UWK7 81 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 Q6ZS49 121 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 PDPNQ86YL7 162 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 SAMD12Q8N8I0 201 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 KLHL30-AS1Q8NEE0 82 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 NPBQ8NG41 125 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 OR5AN1Q8NGI8 311 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 OR5H6Q8NGV6 325 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 WIPF2Q8TF74 440 aaPredicted RBP8.59□□□□□ -1.03
CLIP3-203ENST00000586457 ADTRPQ96IZ2 230 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 RITA1Q96K30 269 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 CLCC1Q96S66 551 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 CABLES2Q9BTV7 478 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 OR51J1Q9H342 316 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 FBXL15Q9H469 300 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 METTL1Q9UBP6 276 aaKnown RBP8.59□□□□□ -1.03
CLIP3-203ENST00000586457 ANXA10Q9UJ72 324 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 ELF5Q9UKW6 265 aaPredicted RBP8.59□□□□□ -1.03
CLIP3-203ENST00000586457 GAB2Q9UQC2 676 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 WSB1Q9Y6I7 421 aa8.59□□□□□ -1.03
CLIP3-203ENST00000586457 MGAM2Q2M2H8 2515 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 TRAV41A0A0B4J266 112 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 TUSC2O75896 110 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 HLA-DRB1P01911 266 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 ELANEP08246 267 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 NFYAP23511 347 aaPredicted RBP8.58□□□□□ -1.04
CLIP3-203ENST00000586457 CNTFRP26992 372 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 LGALS7P47929 136 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 RORCP51449 518 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 RAB25P57735 213 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 VBP1P61758 197 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 RPL23AP62750 156 aaKnown RBP8.58□□□□□ -1.04
CLIP3-203ENST00000586457 FOXE3Q13461 319 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 TCTEX1D4Q5JR98 221 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 ZNF660Q6AZW8 331 aaPredicted RBP8.58□□□□□ -1.04
CLIP3-203ENST00000586457 MZT2AQ6P582 158 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 C1QL4Q86Z23 238 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 ZNF695Q8IW36 515 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 BEST4Q8NFU0 473 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 AP3S1Q92572 193 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 DPF1Q92782 380 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 KCTD12Q96CX2 325 aaKnown RBP8.58□□□□□ -1.04
CLIP3-203ENST00000586457 HSPB9Q9BQS6 159 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 TOLLIPQ9H0E2 274 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms