RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 FBXL15Q9H469 300 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 FAM49BQ9NUQ9 324 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 COMMD9Q9P000 198 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 SLC22A13Q9Y226 551 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 TP53TG1Q9Y2A0 90 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 FAT4Q6V0I7 4981 aa4.13□□□□□ -1.75
VPS53-219ENST00000576019 METTL15A6NJ78 407 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 NPIPB7O75200 414 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 UGT2B11O75310 529 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 SUPT3HO75486 399 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 GABARAPO95166 117 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 ISG15P05161 165 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 CDK1P06493 297 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 SLC25A16P16260 332 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 M6PRP20645 277 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 PSMA1P25786 263 aaKnown RBP4.12□□□□□ -1.75
VPS53-219ENST00000576019 PSMB2P49721 201 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 PPOXP50336 477 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 AP2S1P53680 142 aaPredicted RBP4.12□□□□□ -1.75
VPS53-219ENST00000576019 ERVS71-1P61550 626 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 TSPAN31Q12999 210 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 SMUG1Q53HV7 270 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 HES5Q5TA89 166 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 C22orf39Q6P5X5 142 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 LRRN1Q6UXK5 716 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 CLEC19AQ6UXS0 136 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 CLEC20AQ6ZU45 233 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 Q8N9P0 234 aaPredicted RBP4.12□□□□□ -1.75
VPS53-219ENST00000576019 NPBQ8NG41 125 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 RHOXF1Q8NHV9 184 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 STOML3Q8TAV4 291 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 CASTOR1Q8WTX7 329 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 RILPQ96NA2 401 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 WFIKKN1Q96NZ8 548 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 QKIQ96PU8 341 aaKnown RBP eCLIP4.12□□□□□ -1.75
VPS53-219ENST00000576019 SPACA5Q96QH8 159 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 METTL9Q9H1A3 318 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 OR51B6Q9H340 312 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 MAP1LC3AQ9H492 121 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 ZSCAN16Q9H4T2 348 aaPredicted RBP4.12□□□□□ -1.75
VPS53-219ENST00000576019 DIABLOQ9NR28 239 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 SAMHD1Q9Y3Z3 626 aaKnown RBP4.12□□□□□ -1.75
VPS53-219ENST00000576019 OR51B4Q9Y5P0 310 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 ALG5Q9Y673 324 aa4.12□□□□□ -1.75
VPS53-219ENST00000576019 DNAH11Q96DT5 4516 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 IGKV1-27A0A075B6S5 117 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 A0A087WYN8 130 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 SPAG7O75391 227 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 MMP23AO75900 390 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 THY1P04216 161 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 G0S2P27469 103 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 PSMB9P28065 219 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 LGALS7P47929 136 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 MEOX2P50222 304 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 SERPINB9P50453 376 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 RAP1GDS1P52306 607 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 PPP1CAP62136 330 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 RPL23P62829 140 aaKnown RBP4.11□□□□□ -1.75
VPS53-219ENST00000576019 UBA52P62987 128 aaKnown RBP4.11□□□□□ -1.75
VPS53-219ENST00000576019 HBG1P69891 147 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 HBG2P69892 147 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 SMAGPQ0VAQ4 97 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 EIF4EBP2Q13542 120 aaPredicted RBP4.11□□□□□ -1.75
VPS53-219ENST00000576019 GINS1Q14691 196 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 CLEC12AQ5QGZ9 265 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 SYPL2Q5VXT5 272 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 CD200R1LQ6Q8B3 271 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 ZNF525Q8N782 197 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 ZDHHC22Q8N966 263 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 C20orf203Q8NBC4 194 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 FMC1Q96HJ9 113 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 KCNS1Q96KK3 526 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 PITX2Q99697 317 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 B9D2Q9BPU9 175 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 SLC25A39Q9BZJ4 359 aaPredicted RBP4.11□□□□□ -1.75
VPS53-219ENST00000576019 MS4A6AQ9H2W1 248 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 RPUSD1Q9UJJ7 312 aaKnown RBP4.11□□□□□ -1.75
VPS53-219ENST00000576019 SNX10Q9Y5X0 201 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 WNK2Q9Y3S1 2297 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 MYH11P35749 1972 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 ARHGAP21Q5T5U3 1957 aa4.11□□□□□ -1.75
VPS53-219ENST00000576019 ZNF407Q9C0G0 2248 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 A0A0J9YWU9 116 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 A0A1B0GXF2 115 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 K7EIL1 84 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 PSPHP1O15172 72 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 REM1O75628 298 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 SOX14O95416 240 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 SERPINA7P05543 415 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 GIG44P09565 113 aaPredicted RBP4.1□□□□□ -1.75
VPS53-219ENST00000576019 TAC1P20366 129 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 APLNRP35414 380 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 GNG10P50151 68 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 KRTAP27-1Q3LI81 207 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 TTMPQ5BVD1 217 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 ATAD3CQ5T2N8 411 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 CEMP1Q6PRD7 247 aaPredicted RBP4.1□□□□□ -1.75
VPS53-219ENST00000576019 C18orf65Q6ZTR6 163 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 FAM183BPQ6ZVS7 135 aa4.1□□□□□ -1.75
VPS53-219ENST00000576019 FAM231DQ6ZW35 169 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms