RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 ARRDC1Q8N5I2 433 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 SSMEM1Q8WWF3 244 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 CAPSLQ8WWF8 208 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 DPAGT1Q9H3H5 408 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 GHITMQ9H3K2 345 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 CCL28Q9NRJ3 127 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 SDHAF2Q9NX18 166 aa11.32□□□□□ -0.6
VIPAS39-208ENST00000556412 NSD1Q96L73 2696 aaPredicted RBP11.31□□□□□ -0.6
VIPAS39-208ENST00000556412 DNAJC9-AS1A6NH13 148 aa11.31□□□□□ -0.6
VIPAS39-208ENST00000556412 TXNL1O43396 289 aa11.31□□□□□ -0.6
VIPAS39-208ENST00000556412 TCF21O43680 179 aa11.31□□□□□ -0.6
VIPAS39-208ENST00000556412 FAUP35544 74 aaKnown RBP11.31□□□□□ -0.6
VIPAS39-208ENST00000556412 IER3P46695 156 aa11.31□□□□□ -0.6
VIPAS39-208ENST00000556412 PPP5CP53041 499 aa11.31□□□□□ -0.6
VIPAS39-208ENST00000556412 HES1Q14469 280 aa11.31□□□□□ -0.6
VIPAS39-208ENST00000556412 ZNF660Q6AZW8 331 aaPredicted RBP11.31□□□□□ -0.6
VIPAS39-208ENST00000556412 GLDNQ6ZMI3 551 aaPredicted RBP11.31□□□□□ -0.6
VIPAS39-208ENST00000556412 ZNF645Q8N7E2 425 aa11.31□□□□□ -0.6
VIPAS39-208ENST00000556412 MOB3AQ96BX8 217 aa11.31□□□□□ -0.6
VIPAS39-208ENST00000556412 RBMXL1Q96E39 390 aaKnown RBP11.31□□□□□ -0.6
VIPAS39-208ENST00000556412 ZNF251Q9BRH9 671 aa11.31□□□□□ -0.6
VIPAS39-208ENST00000556412 FXYD6Q9H0Q3 95 aa11.31□□□□□ -0.6
VIPAS39-208ENST00000556412 DSCAML1Q8TD84 2053 aa11.31□□□□□ -0.6
VIPAS39-208ENST00000556412 ANK3Q12955 4377 aaKnown RBP11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 OR5H14A6NHG9 310 aa11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 TNFSF12O43508 249 aa11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 LINC00205P59089 165 aa11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 SRSF2Q01130 221 aaKnown RBP11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 OR51S1Q8NGJ8 323 aa11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 FAM216AQ8WUB2 273 aa11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 C5orf30Q96GV9 206 aa11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 PRDM13Q9H4Q3 707 aa11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 ESM1Q9NQ30 184 aa11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 PROP1O75360 226 aa11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 PGAM2P15259 253 aa11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 HILS1P60008 231 aa11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 HNF4GQ14541 408 aa11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 SLC9A3R2Q15599 337 aa11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 FAM71F2Q6NXP2 309 aa11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 JMJD8Q96S16 334 aa11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 NABP2Q9BQ15 211 aa11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 CCDC32Q9BV29 185 aa11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 HRASLSQ9HDD0 168 aa11.3□□□□□ -0.6
VIPAS39-208ENST00000556412 SLC22A5O76082 557 aa11.29□□□□□ -0.6
VIPAS39-208ENST00000556412 IGKV1D-33P01593 117 aa11.29□□□□□ -0.6
VIPAS39-208ENST00000556412 IGKV1-33P01594 117 aa11.29□□□□□ -0.6
VIPAS39-208ENST00000556412 SNRNP70P08621 437 aaKnown RBP11.29□□□□□ -0.6
VIPAS39-208ENST00000556412 ZNF735P0CB33 412 aa11.29□□□□□ -0.6
VIPAS39-208ENST00000556412 CT45A6P0DMU7 189 aa11.29□□□□□ -0.6
VIPAS39-208ENST00000556412 CT45A5P0DMU8 189 aa11.29□□□□□ -0.6
VIPAS39-208ENST00000556412 CT45A7P0DMV0 189 aa11.29□□□□□ -0.6
VIPAS39-208ENST00000556412 CD40LGP29965 261 aa11.29□□□□□ -0.6
VIPAS39-208ENST00000556412 LSAMPQ13449 338 aa11.29□□□□□ -0.6
VIPAS39-208ENST00000556412 AADACL3Q5VUY0 350 aa11.29□□□□□ -0.6
VIPAS39-208ENST00000556412 ZNF818PQ6ZRF7 136 aa11.29□□□□□ -0.6
VIPAS39-208ENST00000556412 TMEM219Q86XT9 240 aa11.29□□□□□ -0.6
VIPAS39-208ENST00000556412 OR5R1Q8NH85 324 aa11.29□□□□□ -0.6
VIPAS39-208ENST00000556412 CFHR4Q92496 578 aa11.29□□□□□ -0.6
VIPAS39-208ENST00000556412 GPHA2Q96T91 129 aa11.29□□□□□ -0.6
VIPAS39-208ENST00000556412 H7C2Y5 167 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 VENTXO95231 258 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 IGLV2-14P01704 120 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 FAM106CPP0CH98 169 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 AANATQ16613 207 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 TUSC1Q2TAM9 212 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 IDO2Q6ZQW0 420 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 ZDHHC22Q8N966 263 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 TERB2Q8NHR7 220 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 PIFOQ8TCI5 191 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 PRRT1Q99946 306 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 CHIAQ9BZP6 476 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 SCP2D1Q9UJQ7 156 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 VPREB3Q9UKI3 123 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 POMT1Q9Y6A1 747 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 PI3P19957 117 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 GNRHRP30968 328 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 DYNLT3P51808 116 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 PHLDA2Q53GA4 152 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 OR2B11Q5JQS5 317 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 ZNF383Q8NA42 475 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 TSC22D3Q99576 134 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 GAB2Q9UQC2 676 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 TCF19Q9Y242 345 aa11.28□□□□□ -0.6
VIPAS39-208ENST00000556412 CENPXA8MT69 81 aa11.27□□□□□ -0.61
VIPAS39-208ENST00000556412 APOA2P02652 100 aa11.27□□□□□ -0.61
VIPAS39-208ENST00000556412 TMEM11P17152 192 aa11.27□□□□□ -0.61
VIPAS39-208ENST00000556412 THBS3P49746 956 aa11.27□□□□□ -0.61
VIPAS39-208ENST00000556412 ABCA11PQ4W5N1 156 aa11.27□□□□□ -0.61
VIPAS39-208ENST00000556412 FBLN7Q53RD9 439 aa11.27□□□□□ -0.61
VIPAS39-208ENST00000556412 LPCAT3Q6P1A2 487 aa11.27□□□□□ -0.61
VIPAS39-208ENST00000556412 KCTD9Q7L273 389 aa11.27□□□□□ -0.61
VIPAS39-208ENST00000556412 LHFPL1Q86WI0 220 aa11.27□□□□□ -0.61
VIPAS39-208ENST00000556412 CMTM1Q8IZ96 169 aa11.27□□□□□ -0.61
VIPAS39-208ENST00000556412 SLC38A6Q8IZM9 456 aa11.27□□□□□ -0.61
VIPAS39-208ENST00000556412 TMEM86BQ8N661 226 aa11.27□□□□□ -0.61
VIPAS39-208ENST00000556412 MARCH1Q8TCQ1 289 aa11.27□□□□□ -0.61
VIPAS39-208ENST00000556412 TCTEX1D2Q8WW35 142 aa11.27□□□□□ -0.61
VIPAS39-208ENST00000556412 BORCS5Q969J3 196 aa11.27□□□□□ -0.61
VIPAS39-208ENST00000556412 A0A0A6YYJ9 748 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms