RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 CLEC3BP05452 202 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 HIST3H3Q16695 136 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 CYP2G1PQ6ZSU1 146 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 NUDT16L1Q9BRJ7 211 aaKnown RBP12.26□□□□□ -0.45
LIMS1-215ENST00000544547 MIEN1Q9BRT3 115 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 GLRX2Q9NS18 164 aa12.26□□□□□ -0.45
LIMS1-215ENST00000544547 PPIHO43447 177 aaKnown RBP12.25□□□□□ -0.45
LIMS1-215ENST00000544547 OR10J4P0C629 311 aa12.25□□□□□ -0.45
LIMS1-215ENST00000544547 CHD3Q12873 2000 aaKnown RBP12.25□□□□□ -0.45
LIMS1-215ENST00000544547 LHFPL1Q86WI0 220 aa12.25□□□□□ -0.45
LIMS1-215ENST00000544547 CORO2AQ92828 525 aa12.25□□□□□ -0.45
LIMS1-215ENST00000544547 SLC35E1Q96K37 410 aa12.25□□□□□ -0.45
LIMS1-215ENST00000544547 IGHV3-43A0A0B4J1X8 118 aa12.25□□□□□ -0.45
LIMS1-215ENST00000544547 M0R1B8 84 aa12.25□□□□□ -0.45
LIMS1-215ENST00000544547 IGHV3-43DP0DP04 118 aa12.25□□□□□ -0.45
LIMS1-215ENST00000544547 TEX38Q6PEX7 206 aa12.25□□□□□ -0.45
LIMS1-215ENST00000544547 OR6C3Q9NZP0 311 aa12.25□□□□□ -0.45
LIMS1-215ENST00000544547 FNDC1Q4ZHG4 1894 aaPredicted RBP12.25□□□□□ -0.45
LIMS1-215ENST00000544547 HES3Q5TGS1 186 aa12.25□□□□□ -0.45
LIMS1-215ENST00000544547 OR2D2Q9H210 308 aa12.25□□□□□ -0.45
LIMS1-215ENST00000544547 TRGV8A0A0C4DH27 118 aa12.25□□□□□ -0.45
LIMS1-215ENST00000544547 PGPEP1LA6NFU8 196 aa12.25□□□□□ -0.45
LIMS1-215ENST00000544547 K7ERU9 68 aa12.25□□□□□ -0.45
LIMS1-215ENST00000544547 OR2W1Q9Y3N9 320 aa12.25□□□□□ -0.45
LIMS1-215ENST00000544547 CREBBPQ92793 2442 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 TRBV24-1A0A075B6N3 115 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 PROB1E7EW31 1015 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 M0R1X1 148 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 BMPR1BO00238 502 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 NPBWR2P48146 333 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 SUB1P53999 127 aaKnown RBP eCLIP12.24□□□□□ -0.455e-7■■■■■ 33
LIMS1-215ENST00000544547 RBM11P57052 281 aaKnown RBP12.24□□□□□ -0.45
LIMS1-215ENST00000544547 CXorf67Q86X51 503 aaPredicted RBP12.24□□□□□ -0.45
LIMS1-215ENST00000544547 CPEB3Q8NE35 698 aaKnown RBP12.24□□□□□ -0.45
LIMS1-215ENST00000544547 MAFAQ8NHW3 353 aaPredicted RBP12.24□□□□□ -0.45
LIMS1-215ENST00000544547 TMEM170AQ8WVE7 144 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 ZPBPQ9BS86 351 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 CFHR5Q9BXR6 569 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 DENND4AQ7Z401 1863 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 COL4A6Q14031 1691 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 FBLL1A6NHQ2 334 aaKnown RBP12.24□□□□□ -0.45
LIMS1-215ENST00000544547 PGLYRP1O75594 196 aaPredicted RBP12.24□□□□□ -0.45
LIMS1-215ENST00000544547 CSN3P07498 182 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 UBE2G1P62253 170 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 OR51G1Q8NGK1 321 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 FLVCR1-AS1Q8TAF5 88 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 APOBEC3DQ96AK3 386 aaPredicted RBP12.24□□□□□ -0.45
LIMS1-215ENST00000544547 COMMD5Q9GZQ3 224 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 RALGAPA1Q6GYQ0 2036 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 TRGV5A0A0B4J1U4 118 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 CHEK1O14757 476 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 GALR2O43603 387 aaPredicted RBP12.24□□□□□ -0.45
LIMS1-215ENST00000544547 RPL11P62913 178 aaKnown RBP12.24□□□□□ -0.45
LIMS1-215ENST00000544547 AARDQ4LEZ3 155 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 TMEM171Q8WVE6 324 aa12.24□□□□□ -0.45
LIMS1-215ENST00000544547 IGHV1OR15-9A0A0B4J2B8 117 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 A0A1B0GUS0 222 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 SLC17A3O00476 420 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 TDGF1P3P51864 188 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 DNM1P46Q6ZS02 220 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 OR10X1Q8NGY0 326 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 FAM173AQ9BQD7 235 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 NOTCH3Q9UM47 2321 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 C1QTNF9BB2RNN3 333 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 TSPAN2O60636 221 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 OR1C1Q15619 314 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 TRAT1Q6PIZ9 186 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 OR4P4Q8NGL7 312 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 OIT3Q8WWZ8 545 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 MESP1Q9BRJ9 268 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 TMEM106BQ9NUM4 274 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 SELENOKQ9Y6D0 94 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 RPL36A-HNRNPH2H7BZ11 118 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 PDE6DO43924 150 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 SERF1AO75920 110 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 GALNSP34059 522 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 SPEM2Q0P670 501 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 GALMQ96C23 342 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 ALKBH7Q9BT30 221 aaPredicted RBP12.23□□□□□ -0.45
LIMS1-215ENST00000544547 PPIAL4AQ9Y536 164 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 IL11RAQ14626 422 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 FXYD3Q14802 87 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 GABRA6Q16445 453 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 GATAD1Q8WUU5 269 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 ST6GALNAC6Q969X2 333 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 LRFN3Q9BTN0 628 aa12.23□□□□□ -0.45
LIMS1-215ENST00000544547 ZP4Q12836 540 aa12.22□□□□□ -0.45
LIMS1-215ENST00000544547 FAM19A2Q8N3H0 131 aa12.22□□□□□ -0.45
LIMS1-215ENST00000544547 D2HGDHQ8N465 521 aa12.22□□□□□ -0.45
LIMS1-215ENST00000544547 OR8G5Q8NG78 346 aa12.22□□□□□ -0.45
LIMS1-215ENST00000544547 TRAV17A0A0B4J275 112 aa12.22□□□□□ -0.45
LIMS1-215ENST00000544547 KLK10O43240 276 aa12.22□□□□□ -0.45
LIMS1-215ENST00000544547 FCGR3BO75015 233 aa12.22□□□□□ -0.45
LIMS1-215ENST00000544547 RAC1P63000 192 aa12.22□□□□□ -0.45
LIMS1-215ENST00000544547 C5orf24Q7Z6I8 188 aa12.22□□□□□ -0.45
LIMS1-215ENST00000544547 ADIPOR1Q96A54 375 aa12.22□□□□□ -0.45
LIMS1-215ENST00000544547 DOCK7Q96N67 2140 aa12.22□□□□□ -0.45
LIMS1-215ENST00000544547 MYO7BQ6PIF6 2116 aa12.22□□□□□ -0.45
LIMS1-215ENST00000544547 B4E171 279 aa12.22□□□□□ -0.45
LIMS1-215ENST00000544547 SRSF10O75494 262 aaKnown RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms