RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 RNF5Q99942 180 aa13.62□□□□□ -0.23
DDX41-217ENST00000515562 C11orf54Q9H0W9 315 aaPredicted RBP13.62□□□□□ -0.23
DDX41-217ENST00000515562 KLK15Q9H2R5 256 aa13.62□□□□□ -0.23
DDX41-217ENST00000515562 FBXL15Q9H469 300 aa13.62□□□□□ -0.23
DDX41-217ENST00000515562 I3L521 148 aa13.61□□□□□ -0.23
DDX41-217ENST00000515562 PDCD5O14737 125 aa13.61□□□□□ -0.23
DDX41-217ENST00000515562 LDLRAD4O15165 306 aa13.61□□□□□ -0.23
DDX41-217ENST00000515562 SCTP09683 121 aa13.61□□□□□ -0.23
DDX41-217ENST00000515562 SERPINB10P48595 397 aa13.61□□□□□ -0.23
DDX41-217ENST00000515562 RAB9AP51151 201 aa13.61□□□□□ -0.23
DDX41-217ENST00000515562 TMEM50BP56557 158 aa13.61□□□□□ -0.23
DDX41-217ENST00000515562 NDPQ00604 133 aa13.61□□□□□ -0.23
DDX41-217ENST00000515562 ZNF616Q08AN1 781 aa13.61□□□□□ -0.23
DDX41-217ENST00000515562 ECSCRQ19T08 205 aa13.61□□□□□ -0.23
DDX41-217ENST00000515562 C2orf76Q3KRA6 126 aa13.61□□□□□ -0.23
DDX41-217ENST00000515562 PLAC9Q5JTB6 97 aa13.61□□□□□ -0.23
DDX41-217ENST00000515562 GLDNQ6ZMI3 551 aaPredicted RBP13.61□□□□□ -0.23
DDX41-217ENST00000515562 CNBD2Q96M20 576 aa13.61□□□□□ -0.23
DDX41-217ENST00000515562 GNB4Q9HAV0 340 aa13.61□□□□□ -0.23
DDX41-217ENST00000515562 ZNF221Q9UK13 617 aa13.61□□□□□ -0.23
DDX41-217ENST00000515562 RAB22AQ9UL26 194 aa13.61□□□□□ -0.23
DDX41-217ENST00000515562 FOXA2Q9Y261 457 aaPredicted RBP13.61□□□□□ -0.23
DDX41-217ENST00000515562 A0A1W2PN81 502 aa13.6□□□□□ -0.23
DDX41-217ENST00000515562 TRDCB7Z8K6 153 aa13.6□□□□□ -0.23
DDX41-217ENST00000515562 SPDEFO95238 335 aa13.6□□□□□ -0.23
DDX41-217ENST00000515562 CHRNA7P36544 502 aa13.6□□□□□ -0.23
DDX41-217ENST00000515562 CX3CL1P78423 397 aa13.6□□□□□ -0.23
DDX41-217ENST00000515562 KIAA0141Q14154 515 aaPredicted RBP13.6□□□□□ -0.23
DDX41-217ENST00000515562 C19orf54Q5BKX5 351 aa13.6□□□□□ -0.23
DDX41-217ENST00000515562 HES5Q5TA89 166 aa13.6□□□□□ -0.23
DDX41-217ENST00000515562 PYHIN1Q6K0P9 492 aa13.6□□□□□ -0.23
DDX41-217ENST00000515562 OR4A4PQ8NGN8 299 aa13.6□□□□□ -0.23
DDX41-217ENST00000515562 OR1N2Q8NGR9 330 aa13.6□□□□□ -0.23
DDX41-217ENST00000515562 ABHD5Q8WTS1 349 aa13.6□□□□□ -0.23
DDX41-217ENST00000515562 NDUFB11Q9NX14 153 aa13.6□□□□□ -0.23
DDX41-217ENST00000515562 RNF150Q9ULK6 438 aa13.6□□□□□ -0.23
DDX41-217ENST00000515562 TRAV1-2A0A0B4J238 106 aa13.59□□□□□ -0.23
DDX41-217ENST00000515562 TMEM272A0A1B0GTI8 110 aa13.59□□□□□ -0.23
DDX41-217ENST00000515562 APOA2P02652 100 aa13.59□□□□□ -0.23
DDX41-217ENST00000515562 CD3GP09693 182 aa13.59□□□□□ -0.23
DDX41-217ENST00000515562 GADD45AP24522 165 aa13.59□□□□□ -0.23
DDX41-217ENST00000515562 MYL9P24844 172 aa13.59□□□□□ -0.23
DDX41-217ENST00000515562 INSL3P51460 131 aa13.59□□□□□ -0.23
DDX41-217ENST00000515562 TMEM267Q0VDI3 215 aaPredicted RBP13.59□□□□□ -0.23
DDX41-217ENST00000515562 SSX1Q16384 188 aa13.59□□□□□ -0.23
DDX41-217ENST00000515562 C11orf87Q6NUJ2 197 aa13.59□□□□□ -0.23
DDX41-217ENST00000515562 PDPNQ86YL7 162 aa13.59□□□□□ -0.23
DDX41-217ENST00000515562 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.59□□□□□ -0.23
DDX41-217ENST00000515562 RAB3CQ96E17 227 aa13.59□□□□□ -0.23
DDX41-217ENST00000515562 TSNAXQ99598 290 aaKnown RBP13.59□□□□□ -0.23
DDX41-217ENST00000515562 RDH8Q9NYR8 311 aa13.59□□□□□ -0.23
DDX41-217ENST00000515562 FBXO7Q9Y3I1 522 aa13.59□□□□□ -0.23
DDX41-217ENST00000515562 IGKV1-6A0A0C4DH72 117 aa13.58□□□□□ -0.24
DDX41-217ENST00000515562 IFITM5A6NNB3 132 aa13.58□□□□□ -0.24
DDX41-217ENST00000515562 DIRAS3O95661 229 aa13.58□□□□□ -0.24
DDX41-217ENST00000515562 TFAP2AP05549 437 aa13.58□□□□□ -0.24
DDX41-217ENST00000515562 GNB1P62873 340 aa13.58□□□□□ -0.24
DDX41-217ENST00000515562 ZNF260Q3ZCT1 412 aa13.58□□□□□ -0.24
DDX41-217ENST00000515562 CD200R1LQ6Q8B3 271 aa13.58□□□□□ -0.24
DDX41-217ENST00000515562 DRAXINQ8NBI3 349 aaPredicted RBP13.58□□□□□ -0.24
DDX41-217ENST00000515562 OR5B12Q96R08 314 aa13.58□□□□□ -0.24
DDX41-217ENST00000515562 METTL1Q9UBP6 276 aaKnown RBP13.58□□□□□ -0.24
DDX41-217ENST00000515562 SCOCQ9UIL1 159 aa13.58□□□□□ -0.24
DDX41-217ENST00000515562 A3GALT2U3KPV4 340 aa13.58□□□□□ -0.24
DDX41-217ENST00000515562 FABP7O15540 132 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 SOX15O60248 233 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 IGKV1-16P04430 117 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 FCGR3AP08637 254 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 RAB6AP20340 208 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 GALP22466 123 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 ECI1P42126 302 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 PSG5Q15238 335 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 AKIRIN2Q53H80 203 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 ACTBL2Q562R1 376 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 ASPHD1Q5U4P2 390 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 ZNF562Q6V9R5 426 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 ZNF383Q8NA42 475 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 OR10R2Q8NGX6 335 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 CABLES2Q9BTV7 478 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 TOLLIPQ9H0E2 274 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 RAB26Q9ULW5 256 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 KCNK7Q9Y2U2 307 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 NUBP2Q9Y5Y2 271 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 COL7A1Q02388 2944 aa13.57□□□□□ -0.24
DDX41-217ENST00000515562 TRDV1A0A1B0GX56 115 aa13.56□□□□□ -0.24
DDX41-217ENST00000515562 M0R1X1 148 aa13.56□□□□□ -0.24
DDX41-217ENST00000515562 MFNGO00587 321 aa13.56□□□□□ -0.24
DDX41-217ENST00000515562 FCN1O00602 326 aa13.56□□□□□ -0.24
DDX41-217ENST00000515562 PROP1O75360 226 aa13.56□□□□□ -0.24
DDX41-217ENST00000515562 LGALS1P09382 135 aaKnown RBP13.56□□□□□ -0.24
DDX41-217ENST00000515562 RAB3BP20337 219 aa13.56□□□□□ -0.24
DDX41-217ENST00000515562 CD40LGP29965 261 aa13.56□□□□□ -0.24
DDX41-217ENST00000515562 OR10A3P58181 314 aa13.56□□□□□ -0.24
DDX41-217ENST00000515562 GABARAPL2P60520 117 aa13.56□□□□□ -0.24
DDX41-217ENST00000515562 PLA2G7Q13093 441 aa13.56□□□□□ -0.24
DDX41-217ENST00000515562 PPP1R27Q86WC6 154 aa13.56□□□□□ -0.24
DDX41-217ENST00000515562 OR10J5Q8NHC4 309 aa13.56□□□□□ -0.24
DDX41-217ENST00000515562 FLYWCH2Q96CP2 140 aaKnown RBP13.56□□□□□ -0.24
DDX41-217ENST00000515562 PRR25Q96S07 402 aa13.56□□□□□ -0.24
DDX41-217ENST00000515562 CENPOQ9BU64 300 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms