RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 SPSB1Q96BD6 273 aa5.13□□□□□ -1.59
VIM-207ENST00000495528 ZNF488Q96MN9 340 aa5.13□□□□□ -1.59
VIM-207ENST00000495528 CCL13Q99616 98 aa5.13□□□□□ -1.59
VIM-207ENST00000495528 PPA2Q9H2U2 334 aa5.13□□□□□ -1.59
VIM-207ENST00000495528 ABCB9Q9NP78 766 aa5.13□□□□□ -1.59
VIM-207ENST00000495528 SIRT7Q9NRC8 400 aa5.13□□□□□ -1.59
VIM-207ENST00000495528 ONECUT1Q9UBC0 465 aa5.13□□□□□ -1.59
VIM-207ENST00000495528 COMMD3Q9UBI1 195 aa5.13□□□□□ -1.59
VIM-207ENST00000495528 MRPS28Q9Y2Q9 187 aaKnown RBP5.13□□□□□ -1.59
VIM-207ENST00000495528 RYR3Q15413 4870 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 MEIOCA2RUB1 952 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 BTBD17A6NE02 478 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 TMEM210A6NLX4 147 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 F8VVB4 439 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 F8VWA3 439 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 NPFFO15130 113 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 AKR7A2O43488 359 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 XRCC3O43542 346 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 RHBDL1O75783 438 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 PAHP00439 452 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 BCL3P20749 454 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 KLRD1Q13241 179 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 RSU1Q15404 277 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 SLC22A6Q4U2R8 563 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 OR10K2Q6IF99 312 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 SFXN4Q6P4A7 337 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 METAP1DQ6UB28 335 aaPredicted RBP5.12□□□□□ -1.59
VIM-207ENST00000495528 ASCL4Q6XD76 172 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 LYPD6Q86Y78 171 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 CROCCP3Q8IVE0 287 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 LYG1Q8N1E2 194 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 FAM216BQ8N7L0 139 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 Q8N7P7 452 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 NKAIN3Q8N8D7 197 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 OR5T2Q8NGG2 359 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 OR5H6Q8NGV6 325 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 MCFD2Q8NI22 146 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 C17orf50Q8WW18 174 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 FCAMRQ8WWV6 532 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 AQP3Q92482 292 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 TNFRSF14Q92956 283 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 SLAMF9Q96A28 289 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 FAM3DQ96BQ1 224 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 SEH1LQ96EE3 360 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 UQCC2Q9BRT2 126 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 KRTAP2-2Q9BYT5 123 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 METTL9Q9H1A3 318 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 BANF2Q9H503 90 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 MTCH1Q9NZJ7 389 aa5.12□□□□□ -1.59
VIM-207ENST00000495528 NOTCH3Q9UM47 2321 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 IGKV1-12A0A0C4DH73 117 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 H3BUX3 64 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.11□□□□□ -1.59
VIM-207ENST00000495528 J3QT63 122 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 AIPO00170 330 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 RGS5O15539 181 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 HPGDSO60760 199 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 CRTAPO75718 401 aaPredicted RBP5.11□□□□□ -1.59
VIM-207ENST00000495528 IGKV1D-12P01611 117 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 TFF1P04155 84 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 MUC1P15941 1255 aaPredicted RBP5.11□□□□□ -1.59
VIM-207ENST00000495528 SERPINA2P20848 420 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 SAA4P35542 130 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 KIR2DS4P43632 304 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 BMXP51813 675 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 EFNB2P52799 333 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 SNU13P55769 128 aaKnown RBP5.11□□□□□ -1.59
VIM-207ENST00000495528 SCN1BQ07699 218 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 IL24Q13007 206 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 LY6EQ16553 131 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 WDR82Q6UXN9 313 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 SAXO1Q8IYX7 474 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 KLHDC1Q8N7A1 406 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 PXT1Q8NFP0 134 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 OR10V1Q8NGI7 309 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 OR6M1Q8NGM8 313 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 LRRC29Q8WV35 223 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 ACOT12Q8WYK0 555 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 FAM46BQ96A09 425 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 CPNE2Q96FN4 548 aaPredicted RBP5.11□□□□□ -1.59
VIM-207ENST00000495528 DCTN5Q9BTE1 182 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 PKIBQ9C010 78 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 WDR13Q9H1Z4 485 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 ABRACLQ9P1F3 81 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 RAB22AQ9UL26 194 aa5.11□□□□□ -1.59
VIM-207ENST00000495528 NBEAL2Q6ZNJ1 2754 aa5.1□□□□□ -1.59
VIM-207ENST00000495528 PMS2P5A8MQ11 134 aa5.1□□□□□ -1.59
VIM-207ENST00000495528 FAM25AB3EWG3 89 aa5.1□□□□□ -1.59
VIM-207ENST00000495528 FAM25CB3EWG5 89 aa5.1□□□□□ -1.59
VIM-207ENST00000495528 FAM25GB3EWG6 89 aa5.1□□□□□ -1.59
VIM-207ENST00000495528 PLXNB1O43157 2135 aa5.1□□□□□ -1.59
VIM-207ENST00000495528 NDUFB3O43676 98 aa5.1□□□□□ -1.59
VIM-207ENST00000495528 NOS1APO75052 506 aaPredicted RBP5.1□□□□□ -1.59
VIM-207ENST00000495528 NXPH2O95156 264 aa5.1□□□□□ -1.59
VIM-207ENST00000495528 UBBP0CG47 229 aa5.1□□□□□ -1.59
VIM-207ENST00000495528 PRKACAP17612 351 aa5.1□□□□□ -1.59
VIM-207ENST00000495528 GLRA1P23415 457 aa5.1□□□□□ -1.59
VIM-207ENST00000495528 MPZP25189 248 aa5.1□□□□□ -1.59
VIM-207ENST00000495528 PAX6P26367 422 aa5.1□□□□□ -1.59
VIM-207ENST00000495528 RANBP1P43487 201 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms