RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 ACOT12Q8WYK0 555 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 AUNIPQ9H7T9 357 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 PLSCR3Q9NRY6 295 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 SMIM31A0A1B0GVY4 71 aa12.63□□□□□ -0.39
LIME1-209ENST00000494776 M0R1X1 148 aa12.63□□□□□ -0.39
LIME1-209ENST00000494776 ARPC4P59998 168 aa12.63□□□□□ -0.39
LIME1-209ENST00000494776 MZT2AQ6P582 158 aa12.63□□□□□ -0.39
LIME1-209ENST00000494776 CNIH2Q6PI25 160 aa12.63□□□□□ -0.39
LIME1-209ENST00000494776 H1FOOQ8IZA3 346 aaPredicted RBP12.63□□□□□ -0.39
LIME1-209ENST00000494776 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.63□□□□□ -0.39
LIME1-209ENST00000494776 OR4X2Q8NGF9 303 aa12.63□□□□□ -0.39
LIME1-209ENST00000494776 KIAA1456Q9P272 454 aa12.63□□□□□ -0.39
LIME1-209ENST00000494776 ANXA10Q9UJ72 324 aa12.63□□□□□ -0.39
LIME1-209ENST00000494776 WASHC3Q9Y3C0 194 aa12.63□□□□□ -0.39
LIME1-209ENST00000494776 H0YJW9 148 aa12.62□□□□□ -0.39
LIME1-209ENST00000494776 J3QRK9 145 aa12.62□□□□□ -0.39
LIME1-209ENST00000494776 NBR2O15453 112 aa12.62□□□□□ -0.39
LIME1-209ENST00000494776 KCNAB3O43448 404 aa12.62□□□□□ -0.39
LIME1-209ENST00000494776 IGHG2P01859 326 aa12.62□□□□□ -0.39
LIME1-209ENST00000494776 APOA2P02652 100 aa12.62□□□□□ -0.39
LIME1-209ENST00000494776 PTHLHP12272 177 aa12.62□□□□□ -0.39
LIME1-209ENST00000494776 SOX6P35712 828 aa12.62□□□□□ -0.39
LIME1-209ENST00000494776 CBX5P45973 191 aa12.62□□□□□ -0.39
LIME1-209ENST00000494776 CLVS1Q8IUQ0 354 aaPredicted RBP12.62□□□□□ -0.39
LIME1-209ENST00000494776 BEST4Q8NFU0 473 aa12.62□□□□□ -0.39
LIME1-209ENST00000494776 CHPT1Q8WUD6 406 aa12.62□□□□□ -0.39
LIME1-209ENST00000494776 AP3S1Q92572 193 aa12.62□□□□□ -0.39
LIME1-209ENST00000494776 RITA1Q96K30 269 aa12.62□□□□□ -0.39
LIME1-209ENST00000494776 NOL4LQ96MY1 436 aaPredicted RBP12.62□□□□□ -0.39
LIME1-209ENST00000494776 CITED2Q99967 270 aaPredicted RBP12.62□□□□□ -0.39
LIME1-209ENST00000494776 MMP27Q9H306 513 aa12.62□□□□□ -0.39
LIME1-209ENST00000494776 IFT46Q9NQC8 304 aa12.62□□□□□ -0.39
LIME1-209ENST00000494776 LINC00527Q9UJ94 153 aa12.62□□□□□ -0.39
LIME1-209ENST00000494776 PSMB11A5LHX3 300 aa12.61□□□□□ -0.39
LIME1-209ENST00000494776 MEIS3P1A6NDR6 274 aa12.61□□□□□ -0.39
LIME1-209ENST00000494776 FCER2P06734 321 aa12.61□□□□□ -0.39
LIME1-209ENST00000494776 NFYAP23511 347 aaPredicted RBP12.61□□□□□ -0.39
LIME1-209ENST00000494776 CNTFRP26992 372 aa12.61□□□□□ -0.39
LIME1-209ENST00000494776 LUMP51884 338 aaPredicted RBP12.61□□□□□ -0.39
LIME1-209ENST00000494776 TAS2R20P59543 309 aa12.61□□□□□ -0.39
LIME1-209ENST00000494776 SLC35B1P78383 322 aa12.61□□□□□ -0.39
LIME1-209ENST00000494776 PLGLAQ15195 96 aa12.61□□□□□ -0.39
LIME1-209ENST00000494776 KHDC1LQ5JSQ8 128 aa12.61□□□□□ -0.39
LIME1-209ENST00000494776 ZNF329Q86UD4 541 aa12.61□□□□□ -0.39
LIME1-209ENST00000494776 NDUFA11Q86Y39 141 aa12.61□□□□□ -0.39
LIME1-209ENST00000494776 FAM71E2Q8N5Q1 922 aa12.61□□□□□ -0.39
LIME1-209ENST00000494776 GVQW1Q8N7I0 195 aa12.61□□□□□ -0.39
LIME1-209ENST00000494776 OR5AN1Q8NGI8 311 aa12.61□□□□□ -0.39
LIME1-209ENST00000494776 FAM110DQ8TAY7 271 aaPredicted RBP12.61□□□□□ -0.39
LIME1-209ENST00000494776 WIPF2Q8TF74 440 aaPredicted RBP12.61□□□□□ -0.39
LIME1-209ENST00000494776 SDHAF2Q9NX18 166 aa12.61□□□□□ -0.39
LIME1-209ENST00000494776 GAB2Q9UQC2 676 aa12.61□□□□□ -0.39
LIME1-209ENST00000494776 TET2Q6N021 2002 aaPredicted RBP12.61□□□□□ -0.39
LIME1-209ENST00000494776 A0A1W2PRX2 142 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 TCRBV4S1A1TA0A5B7 111 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 FAM25AB3EWG3 89 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 FAM25CB3EWG5 89 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 FAM25GB3EWG6 89 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 AP4M1O00189 453 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 NOL3O60936 208 aaKnown RBP12.6□□□□□ -0.39
LIME1-209ENST00000494776 PROP1O75360 226 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 RBBP9O75884 186 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 TSPAN15O95858 294 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 APOA1P02647 267 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 OPN1MWP04001 364 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 EIF4EP06730 217 aaKnown RBP12.6□□□□□ -0.39
LIME1-209ENST00000494776 OPN1MW2P0DN77 364 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 OPN1MW3P0DN78 364 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 ZNF182P17025 639 aaPredicted RBP12.6□□□□□ -0.39
LIME1-209ENST00000494776 RPL5P46777 297 aaKnown RBP12.6□□□□□ -0.39
LIME1-209ENST00000494776 LINC00205P59089 165 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 CBX3Q13185 183 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 HOGA1Q86XE5 327 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 ZNF383Q8NA42 475 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 CMTM3Q96MX0 182 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 GON7Q9BXV9 100 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 NECAP2Q9NVZ3 263 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 ZNF107Q9UII5 783 aaPredicted RBP12.6□□□□□ -0.39
LIME1-209ENST00000494776 MRPS7Q9Y2R9 242 aaKnown RBP12.6□□□□□ -0.39
LIME1-209ENST00000494776 OR2W1Q9Y3N9 320 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 MGAM2Q2M2H8 2515 aa12.6□□□□□ -0.39
LIME1-209ENST00000494776 LINC01548A6NM66 108 aa12.59□□□□□ -0.39
LIME1-209ENST00000494776 HPGDSO60760 199 aa12.59□□□□□ -0.39
LIME1-209ENST00000494776 PRSS3P35030 304 aa12.59□□□□□ -0.39
LIME1-209ENST00000494776 THBS3P49746 956 aa12.59□□□□□ -0.39
LIME1-209ENST00000494776 RPS16P62249 146 aaKnown RBP12.59□□□□□ -0.39
LIME1-209ENST00000494776 LIN54Q6MZP7 749 aa12.59□□□□□ -0.39
LIME1-209ENST00000494776 C10orf99Q6UWK7 81 aa12.59□□□□□ -0.39
LIME1-209ENST00000494776 PDPNQ86YL7 162 aa12.59□□□□□ -0.39
LIME1-209ENST00000494776 STPG2Q8N412 459 aa12.59□□□□□ -0.39
LIME1-209ENST00000494776 NPBQ8NG41 125 aa12.59□□□□□ -0.39
LIME1-209ENST00000494776 RAB2BQ8WUD1 216 aa12.59□□□□□ -0.39
LIME1-209ENST00000494776 FLYWCH2Q96CP2 140 aaKnown RBP12.59□□□□□ -0.39
LIME1-209ENST00000494776 RNF5Q99942 180 aa12.59□□□□□ -0.39
LIME1-209ENST00000494776 SLC35D1Q9NTN3 355 aa12.59□□□□□ -0.39
LIME1-209ENST00000494776 RRHO14718 337 aa12.58□□□□□ -0.4
LIME1-209ENST00000494776 SLC22A5O76082 557 aa12.58□□□□□ -0.4
LIME1-209ENST00000494776 ELK1P19419 428 aa12.58□□□□□ -0.4
LIME1-209ENST00000494776 CD83Q01151 205 aa12.58□□□□□ -0.4
LIME1-209ENST00000494776 TAGLNQ01995 201 aaKnown RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms