RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 CENPOQ9BU64 300 aa8.97□□□□□ -0.97
COL6A3-213ENST00000493475 RSRP1Q9BUV0 290 aa8.97□□□□□ -0.97
COL6A3-213ENST00000493475 RANGRFQ9HD47 186 aaPredicted RBP8.97□□□□□ -0.97
COL6A3-213ENST00000493475 C12orf4Q9NQ89 552 aa8.97□□□□□ -0.97
COL6A3-213ENST00000493475 METTL1Q9UBP6 276 aaKnown RBP8.97□□□□□ -0.97
COL6A3-213ENST00000493475 H0Y980 276 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 H3BUA1 57 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 LDLRAD4O15165 306 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 FRMD6-AS1P0C7T7 363 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 ARSBP15848 533 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 CNTFRP26992 372 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 CEACAM6P40199 344 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 SERPINB10P48595 397 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 SLURP1P55000 103 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 RPS16P62249 146 aaKnown RBP8.96□□□□□ -0.98
COL6A3-213ENST00000493475 SIGIRRQ6IA17 410 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 ACSM6Q6P461 480 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 C6orf201Q7Z4U5 140 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 PDPNQ86YL7 162 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 BPIFB6Q8NFQ5 453 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 ISOC1Q96CN7 298 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 SULT4A1Q9BR01 284 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 TM2D1Q9BX74 207 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 PLGRKTQ9HBL7 147 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 PLCXD1Q9NUJ7 323 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 SCN3BQ9NY72 215 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 PSORS1C1Q9UIG5 152 aa8.96□□□□□ -0.98
COL6A3-213ENST00000493475 H0YJW9 148 aa8.95□□□□□ -0.98
COL6A3-213ENST00000493475 ARL6IP5O75915 188 aa8.95□□□□□ -0.98
COL6A3-213ENST00000493475 TRGV3P03979 118 aa8.95□□□□□ -0.98
COL6A3-213ENST00000493475 SRMP19623 302 aa8.95□□□□□ -0.98
COL6A3-213ENST00000493475 AADACP22760 399 aa8.95□□□□□ -0.98
COL6A3-213ENST00000493475 PSMA1P25786 263 aaKnown RBP8.95□□□□□ -0.98
COL6A3-213ENST00000493475 LGALS7P47929 136 aa8.95□□□□□ -0.98
COL6A3-213ENST00000493475 TAGLNQ01995 201 aaKnown RBP8.95□□□□□ -0.98
COL6A3-213ENST00000493475 KIAA0141Q14154 515 aaPredicted RBP8.95□□□□□ -0.98
COL6A3-213ENST00000493475 TRAM1Q15629 374 aa8.95□□□□□ -0.98
COL6A3-213ENST00000493475 SRSF7Q16629 238 aaKnown RBP eCLIP8.95□□□□□ -0.98
COL6A3-213ENST00000493475 CASC10Q5T4H9 136 aa8.95□□□□□ -0.98
COL6A3-213ENST00000493475 ASPHD1Q5U4P2 390 aa8.95□□□□□ -0.98
COL6A3-213ENST00000493475 GTSCR1Q86UQ5 136 aa8.95□□□□□ -0.98
COL6A3-213ENST00000493475 SBSPONQ8IVN8 264 aa8.95□□□□□ -0.98
COL6A3-213ENST00000493475 NANOGP1Q8N7R0 232 aa8.95□□□□□ -0.98
COL6A3-213ENST00000493475 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.95□□□□□ -0.98
COL6A3-213ENST00000493475 ZNF485Q8NCK3 441 aa8.95□□□□□ -0.98
COL6A3-213ENST00000493475 OR5AN1Q8NGI8 311 aa8.95□□□□□ -0.98
COL6A3-213ENST00000493475 RITA1Q96K30 269 aa8.95□□□□□ -0.98
COL6A3-213ENST00000493475 TMED9Q9BVK6 235 aa8.95□□□□□ -0.98
COL6A3-213ENST00000493475 NUBP2Q9Y5Y2 271 aa8.95□□□□□ -0.98
COL6A3-213ENST00000493475 DNAH9Q9NYC9 4486 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 IGHV4OR15-8A0A075B7B6 117 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 A0A087WW49 117 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 TRBV6-6A0A0A6YYG2 114 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 A0A0B4J203 849 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 CREBL2O60519 120 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-213ENST00000493475 NAPSAO96009 420 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 CA2P00918 260 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 IGHV3-11P01762 117 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 IFNA6P05013 189 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 CT45A6P0DMU7 189 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 CT45A5P0DMU8 189 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 CT45A7P0DMV0 189 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 PSMD7P51665 324 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 HLA-DRB3P79483 266 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 RPL39P5Q59GN2 51 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 C1orf100Q5SVJ3 147 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 OVCH2Q7RTZ1 564 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 CEACAM19Q7Z692 300 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 POC5Q8NA72 575 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 LFNGQ8NES3 379 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 OR56B1Q8NGI3 324 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 GRPEL2Q8TAA5 225 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 UFD1Q92890 307 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 MS4A10Q96PG2 267 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 CLCC1Q96S66 551 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 ALX4Q9H161 411 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-213ENST00000493475 HSF4Q9ULV5 492 aa8.94□□□□□ -0.98
COL6A3-213ENST00000493475 SORL1Q92673 2214 aa8.93□□□□□ -0.98
COL6A3-213ENST00000493475 NDPQ00604 133 aa8.93□□□□□ -0.98
COL6A3-213ENST00000493475 TPBGQ13641 420 aa8.93□□□□□ -0.98
COL6A3-213ENST00000493475 FXYD3Q14802 87 aa8.93□□□□□ -0.98
COL6A3-213ENST00000493475 PSG5Q15238 335 aa8.93□□□□□ -0.98
COL6A3-213ENST00000493475 SPHARQ15513 63 aa8.93□□□□□ -0.98
COL6A3-213ENST00000493475 MED22Q15528 200 aa8.93□□□□□ -0.98
COL6A3-213ENST00000493475 RTL8BQ17RB0 113 aa8.93□□□□□ -0.98
COL6A3-213ENST00000493475 RNLSQ5VYX0 342 aa8.93□□□□□ -0.98
COL6A3-213ENST00000493475 LCN12Q6JVE5 192 aa8.93□□□□□ -0.98
COL6A3-213ENST00000493475 ZNF880Q6PDB4 577 aa8.93□□□□□ -0.98
COL6A3-213ENST00000493475 GLDNQ6ZMI3 551 aaPredicted RBP8.93□□□□□ -0.98
COL6A3-213ENST00000493475 IL17DQ8TAD2 202 aa8.93□□□□□ -0.98
COL6A3-213ENST00000493475 PTX4Q96A99 478 aa8.93□□□□□ -0.98
COL6A3-213ENST00000493475 ABHD14BQ96IU4 210 aa8.93□□□□□ -0.98
COL6A3-213ENST00000493475 RHOVQ96L33 236 aa8.93□□□□□ -0.98
COL6A3-213ENST00000493475 CITED4Q96RK1 184 aa8.93□□□□□ -0.98
COL6A3-213ENST00000493475 PHB2Q99623 299 aa8.93□□□□□ -0.98
COL6A3-213ENST00000493475 CMSS1Q9BQ75 279 aaKnown RBP8.93□□□□□ -0.98
COL6A3-213ENST00000493475 SPATA25Q9BR10 227 aa8.93□□□□□ -0.98
COL6A3-213ENST00000493475 RBM7Q9Y580 266 aaKnown RBP8.93□□□□□ -0.98
COL6A3-213ENST00000493475 RYR3Q15413 4870 aa8.92□□□□□ -0.98
COL6A3-213ENST00000493475 TMEM14DPA8MWL7 114 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms