RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 CNTFRP26992 372 aa9.62□□□□□ -0.87
SDC3-204ENST00000487984 CDX1P47902 265 aaPredicted RBP9.62□□□□□ -0.87
SDC3-204ENST00000487984 RAB25P57735 213 aa9.62□□□□□ -0.87
SDC3-204ENST00000487984 OR10A3P58181 314 aa9.62□□□□□ -0.87
SDC3-204ENST00000487984 ACTBP60709 375 aa9.62□□□□□ -0.87
SDC3-204ENST00000487984 DEFB121Q5J5C9 76 aa9.62□□□□□ -0.87
SDC3-204ENST00000487984 LY6G6FQ5SQ64 297 aa9.62□□□□□ -0.87
SDC3-204ENST00000487984 ZNF833PQ6ZTB9 187 aa9.62□□□□□ -0.87
SDC3-204ENST00000487984 OR2AK2Q8NG84 335 aa9.62□□□□□ -0.87
SDC3-204ENST00000487984 OR8U1Q8NH10 309 aa9.62□□□□□ -0.87
SDC3-204ENST00000487984 IL1F10Q8WWZ1 152 aa9.62□□□□□ -0.87
SDC3-204ENST00000487984 S100ZQ8WXG8 99 aa9.62□□□□□ -0.87
SDC3-204ENST00000487984 CMTM3Q96MX0 182 aa9.62□□□□□ -0.87
SDC3-204ENST00000487984 IFI27L2Q9H2X8 130 aa9.62□□□□□ -0.87
SDC3-204ENST00000487984 ZNF580Q9UK33 172 aa9.62□□□□□ -0.87
SDC3-204ENST00000487984 ETV7Q9Y603 341 aa9.62□□□□□ -0.87
SDC3-204ENST00000487984 BPNT1O95861 308 aa9.61□□□□□ -0.87
SDC3-204ENST00000487984 PSMB8P28062 276 aa9.61□□□□□ -0.87
SDC3-204ENST00000487984 BLVRBP30043 206 aaPredicted RBP9.61□□□□□ -0.87
SDC3-204ENST00000487984 KIR2DS1Q14954 304 aa9.61□□□□□ -0.87
SDC3-204ENST00000487984 HES5Q5TA89 166 aa9.61□□□□□ -0.87
SDC3-204ENST00000487984 ZNF880Q6PDB4 577 aa9.61□□□□□ -0.87
SDC3-204ENST00000487984 OR6Q1Q8NGQ2 317 aa9.61□□□□□ -0.87
SDC3-204ENST00000487984 C4orf3Q8WVX3 66 aa9.61□□□□□ -0.87
SDC3-204ENST00000487984 GFI1Q99684 422 aa9.61□□□□□ -0.87
SDC3-204ENST00000487984 ZNF251Q9BRH9 671 aa9.61□□□□□ -0.87
SDC3-204ENST00000487984 CHMP1AQ9HD42 196 aaPredicted RBP9.61□□□□□ -0.87
SDC3-204ENST00000487984 COMMD3Q9UBI1 195 aa9.61□□□□□ -0.87
SDC3-204ENST00000487984 SPATA2Q9UM82 520 aa9.61□□□□□ -0.87
SDC3-204ENST00000487984 IGHV7-81A0A0B4J1V7 117 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 NBR2O15453 112 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 ST8SIA5O15466 376 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 HLA-DRB1P01911 266 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 OR5H8P0DN80 308 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 ARSBP15848 533 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 TALDO1P37837 337 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 P2RY14Q15391 338 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 SPANXN2Q5MJ10 180 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 MOB1BQ7L9L4 216 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 NR2C2APQ86WQ0 139 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 SETD6Q8TBK2 473 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 MYOZ3Q8TDC0 251 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 FAM3DQ96BQ1 224 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 HDHD3Q9BSH5 251 aaPredicted RBP9.6□□□□□ -0.87
SDC3-204ENST00000487984 PARP12Q9H0J9 701 aaKnown RBP9.6□□□□□ -0.87
SDC3-204ENST00000487984 LPAR5Q9H1C0 372 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 OR51J1Q9H342 316 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 PLEKHJ1Q9NW61 149 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 RABL2AQ9UBK7 228 aaPredicted RBP9.6□□□□□ -0.87
SDC3-204ENST00000487984 AK3Q9UIJ7 227 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 RABL2BQ9UNT1 228 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 WSB1Q9Y6I7 421 aa9.6□□□□□ -0.87
SDC3-204ENST00000487984 TRBV6-6A0A0A6YYG2 114 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 FAM25AB3EWG3 89 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 FAM25CB3EWG5 89 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 FAM25GB3EWG6 89 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 G3V318 75 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 ATP6V0E1O15342 81 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 SOCS1O15524 211 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 PPIFP30405 207 aaKnown RBP9.59□□□□□ -0.87
SDC3-204ENST00000487984 LUMP51884 338 aaPredicted RBP9.59□□□□□ -0.87
SDC3-204ENST00000487984 DGCR2P98153 550 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 FHL3Q13643 280 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 C5orf64Q2M2E5 130 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 RPL39P5Q59GN2 51 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 C11orf87Q6NUJ2 197 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 FAM71F2Q6NXP2 309 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 FAM131AQ6UXB0 335 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 SAMD12Q8N8I0 201 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 NPBQ8NG41 125 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 OR5M8Q8NGP6 311 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 PTX4Q96A99 478 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 WDR12Q9GZL7 423 aaKnown RBP9.59□□□□□ -0.87
SDC3-204ENST00000487984 KLK15Q9H2R5 256 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 RIMS4Q9H426 269 aaPredicted RBP9.59□□□□□ -0.87
SDC3-204ENST00000487984 PARP11Q9NR21 331 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 SLC23A1Q9UHI7 598 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 COL7A1Q02388 2944 aa9.59□□□□□ -0.87
SDC3-204ENST00000487984 METTL21EPA6NDL7 271 aa9.58□□□□□ -0.88
SDC3-204ENST00000487984 FOXI3A8MTJ6 420 aaPredicted RBP9.58□□□□□ -0.88
SDC3-204ENST00000487984 CTDSP2O14595 271 aa9.58□□□□□ -0.88
SDC3-204ENST00000487984 RAB29O14966 203 aa9.58□□□□□ -0.88
SDC3-204ENST00000487984 SCGNO76038 276 aa9.58□□□□□ -0.88
SDC3-204ENST00000487984 NDUFA3O95167 84 aa9.58□□□□□ -0.88
SDC3-204ENST00000487984 APOA1P02647 267 aa9.58□□□□□ -0.88
SDC3-204ENST00000487984 CT45A6P0DMU7 189 aa9.58□□□□□ -0.88
SDC3-204ENST00000487984 CT45A5P0DMU8 189 aa9.58□□□□□ -0.88
SDC3-204ENST00000487984 CT45A7P0DMV0 189 aa9.58□□□□□ -0.88
SDC3-204ENST00000487984 SNRPBP14678 240 aaKnown RBP9.58□□□□□ -0.88
SDC3-204ENST00000487984 NDPQ00604 133 aa9.58□□□□□ -0.88
SDC3-204ENST00000487984 ZNF45Q02386 682 aa9.58□□□□□ -0.88
SDC3-204ENST00000487984 KIAA0141Q14154 515 aaPredicted RBP9.58□□□□□ -0.88
SDC3-204ENST00000487984 ZNF846Q147U1 533 aa9.58□□□□□ -0.88
SDC3-204ENST00000487984 UBE2NLQ5JXB2 153 aa9.58□□□□□ -0.88
SDC3-204ENST00000487984 VAX1Q5SQQ9 334 aa9.58□□□□□ -0.88
SDC3-204ENST00000487984 LIN54Q6MZP7 749 aa9.58□□□□□ -0.88
SDC3-204ENST00000487984 GLDNQ6ZMI3 551 aaPredicted RBP9.58□□□□□ -0.88
SDC3-204ENST00000487984 FAM89BQ8N5H3 189 aa9.58□□□□□ -0.88
SDC3-204ENST00000487984 LGALS14Q8TCE9 139 aa9.58□□□□□ -0.88
SDC3-204ENST00000487984 C15orf40Q8WUR7 153 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms