RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 TNFSF12O43508 249 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 SLC22A5O76082 557 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 DUS4LO95620 317 aaKnown RBP6.7□□□□□ -1.34
USP4-210ENST00000483212 HLA-AP01891 365 aaKnown RBP6.7□□□□□ -1.34
USP4-210ENST00000483212 IGHV4-31P0DP07 118 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 HOXB4P17483 251 aaPredicted RBP6.7□□□□□ -1.34
USP4-210ENST00000483212 COX7A1P24310 79 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 F2RP25116 425 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 DUTP33316 252 aaKnown RBP6.7□□□□□ -1.34
USP4-210ENST00000483212 GPR12P47775 334 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 LINC00205P59089 165 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 KLRD1Q13241 179 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 TMEM187Q14656 261 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 C2orf68Q2NKX9 166 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 TMEM249Q2WGJ8 235 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 HLA-DRB5Q30154 266 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 ANKRD55Q3KP44 614 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 ABCA11PQ4W5N1 156 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 C4orf46Q504U0 113 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 FAM71F2Q6NXP2 309 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 BTNL3Q6UXE8 466 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 KCTD9Q7L273 389 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 LYG1Q8N1E2 194 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 PNKDQ8N490 385 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 CCDC71LQ8N9Z2 235 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 MAPK1IP1LQ8NDC0 245 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 LHFPL5Q8TAF8 219 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 DDB2Q92466 427 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 MSI2Q96DH6 328 aaKnown RBP6.7□□□□□ -1.34
USP4-210ENST00000483212 CLEC7AQ9BXN2 247 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 PRR13Q9NZ81 148 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 PIPOXQ9P0Z9 390 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 SHPKQ9UHJ6 478 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 KCNS2Q9ULS6 477 aa6.7□□□□□ -1.34
USP4-210ENST00000483212 RBM7Q9Y580 266 aaKnown RBP6.7□□□□□ -1.34
USP4-210ENST00000483212 ZNF469Q96JG9 3925 aaPredicted RBP6.69□□□□□ -1.34
USP4-210ENST00000483212 CR1P17927 2039 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 ITPR3Q14573 2671 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 DOCK11Q5JSL3 2073 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 TRAV20A0A0B4J274 112 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 TEX13DA0A0J9YY54 714 aaPredicted RBP6.69□□□□□ -1.34
USP4-210ENST00000483212 C3orf85A0A1B0GTC6 90 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 H0Y980 276 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 BUB1B-PAK6H3BSN5 160 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 CREBL2O60519 120 aaPredicted RBP6.69□□□□□ -1.34
USP4-210ENST00000483212 TOX4O94842 621 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 OR5AC1P0C628 307 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 TRAPPC2P0DI81 140 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 TRAPPC2BP0DI82 140 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 SULT1A3P0DMM9 295 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 SULT1A4P0DMN0 295 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 VAMP1P23763 118 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 UCP1P25874 307 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 RRAS2P62070 204 aaPredicted RBP6.69□□□□□ -1.34
USP4-210ENST00000483212 CBX3Q13185 183 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 DIAPH2-AS1Q14236 149 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 FCN2Q15485 313 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 SLC9A3R2Q15599 337 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 SP6Q3SY56 376 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 ZNF585BQ52M93 769 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 NCR3LG1Q68D85 454 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 ZNF66Q6ZN08 573 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 LIAT1Q6ZQX7 453 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 SGPP2Q8IWX5 399 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 CMTM1Q8IZ96 169 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 CIARTQ8N365 385 aaPredicted RBP6.69□□□□□ -1.34
USP4-210ENST00000483212 LRTM2Q8N967 370 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 LINC01356Q8N9X3 169 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 OR11H7Q8NGC8 314 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 OR13D1Q8NGV5 346 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 GLYATL2Q8WU03 294 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 TMEM186Q96B77 213 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 AJUBAQ96IF1 538 aa6.69□□□□□ -1.34
USP4-210ENST00000483212 HSD17B10Q99714 261 aaKnown RBP6.69□□□□□ -1.34
USP4-210ENST00000483212 GPN1Q9HCN4 374 aaPredicted RBP6.69□□□□□ -1.34
USP4-210ENST00000483212 MAP1AP78559 2803 aaPredicted RBP6.68□□□□□ -1.34
USP4-210ENST00000483212 MED13LQ71F56 2210 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 HMX3A6NHT5 357 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 M0R1X1 148 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 B3GALNT1O75752 331 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 CDS2O95674 445 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 AVPP01185 164 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 IFNA2P01563 188 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 IGKV1-39P01597 117 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 IGKV1D-39P04432 117 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 CT45A6P0DMU7 189 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 CT45A5P0DMU8 189 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 CT45A7P0DMV0 189 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 HLA-GP17693 338 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 CXCL3P19876 107 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 GATA3P23771 443 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 PRRX1P54821 245 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 LIN54Q6MZP7 749 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 C12orf45Q8N5I9 185 aaPredicted RBP6.68□□□□□ -1.34
USP4-210ENST00000483212 ZNF383Q8NA42 475 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 OR51H1Q8NH63 302 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 CASTOR1Q8WTX7 329 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 C18orf12Q96KH6 178 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 TMEM56Q96MV1 263 aa6.68□□□□□ -1.34
USP4-210ENST00000483212 NABP2Q9BQ15 211 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms