RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 CEACAM6P40199 344 aa7.1□□□□□ -1.27
SYNE1-214ENST00000454018 OR3A3P47888 321 aa7.1□□□□□ -1.27
SYNE1-214ENST00000454018 ARHGDIBP52566 201 aa7.1□□□□□ -1.27
SYNE1-214ENST00000454018 ZNF137PP52743 207 aa7.1□□□□□ -1.27
SYNE1-214ENST00000454018 TAS2R19P59542 299 aa7.1□□□□□ -1.27
SYNE1-214ENST00000454018 UTF1Q5T230 341 aa7.1□□□□□ -1.27
SYNE1-214ENST00000454018 C5orf24Q7Z6I8 188 aa7.1□□□□□ -1.27
SYNE1-214ENST00000454018 H1FOOQ8IZA3 346 aaPredicted RBP7.1□□□□□ -1.27
SYNE1-214ENST00000454018 GDPD1Q8N9F7 314 aa7.1□□□□□ -1.27
SYNE1-214ENST00000454018 GHITMQ9H3K2 345 aa7.1□□□□□ -1.27
SYNE1-214ENST00000454018 EHFQ9NZC4 300 aa7.1□□□□□ -1.27
SYNE1-214ENST00000454018 DPM3Q9P2X0 92 aa7.1□□□□□ -1.27
SYNE1-214ENST00000454018 FAM96BQ9Y3D0 163 aa7.1□□□□□ -1.27
SYNE1-214ENST00000454018 SETD2Q9BYW2 2564 aaPredicted RBP7.09□□□□□ -1.27
SYNE1-214ENST00000454018 NIPBLQ6KC79 2804 aaeCLIP7.09□□□□□ -1.27
SYNE1-214ENST00000454018 A0A0U1RQK1 487 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 A0A1W2PPE3 182 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 A0A1W2PRD5 423 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 A0A1W2PRF3 423 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 A0A1W2PRM7 423 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 OOSP1A8MZH6 123 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 SLC31A2O15432 143 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 TXNL1O43396 289 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 OR5H8P0DN80 308 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 BTF3P20290 206 aaKnown RBP7.09□□□□□ -1.27
SYNE1-214ENST00000454018 HLA-DMAP28067 261 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 UCP3P55916 312 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 AP3S2P59780 193 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 DYRK1AQ13627 763 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 RNASE10Q5GAN6 216 aaKnown RBP7.09□□□□□ -1.27
SYNE1-214ENST00000454018 CT45A1Q5HYN5 189 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 VAX1Q5SQQ9 334 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 FAM53AQ6NSI3 398 aaPredicted RBP7.09□□□□□ -1.27
SYNE1-214ENST00000454018 CCDC144NLQ6NUI1 221 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 FAM71F2Q6NXP2 309 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 LYG1Q8N1E2 194 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 ARRDC1Q8N5I2 433 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 TMEM229BQ8NBD8 167 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 CT45A3Q8NHU0 189 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 DEDD2Q8WXF8 326 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 TOMM40LQ969M1 308 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 RPEQ96AT9 228 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 MALSU1Q96EH3 234 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 IFI27L2Q9H2X8 130 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 PIPOXQ9P0Z9 390 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 ZNRD1Q9P1U0 126 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 OR2W1Q9Y3N9 320 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 JMJD1CQ15652 2540 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 C2CD3Q4AC94 2353 aa7.09□□□□□ -1.27
SYNE1-214ENST00000454018 SAA2-SAA4A0A096LPE2 208 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 HSD17B6O14756 317 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 RAB29O14966 203 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 ACTL6BO94805 426 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 PPYP01298 95 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 CD74P04233 296 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 CD3DP04234 171 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 AKAIN1P0CW23 69 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 SAA2P0DJI9 122 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-214ENST00000454018 NFYAP23511 347 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-214ENST00000454018 ZNF134P52741 427 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 MEF2DQ14814 521 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 AANATQ16613 207 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 TPTE2P1Q5T6R2 138 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 TRIQKQ629K1 86 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 LHFPL4Q7Z7J7 247 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 LDLRAD3Q86YD5 345 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-214ENST00000454018 C22orf15Q8WYQ4 148 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 AJUBAQ96IF1 538 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 SLC6A7Q99884 636 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 AGMATQ9BSE5 352 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 THAP7Q9BT49 309 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-214ENST00000454018 PARP12Q9H0J9 701 aaKnown RBP7.08□□□□□ -1.28
SYNE1-214ENST00000454018 OR2D2Q9H210 308 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 PRDM13Q9H4Q3 707 aa7.08□□□□□ -1.28
SYNE1-214ENST00000454018 HEYLQ9NQ87 328 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-214ENST00000454018 ANKRD20A5PA0PJZ0 165 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 VGLL3A8MV65 326 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 LY6LH3BQJ8 138 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 LANCL1O43813 399 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 SLC22A5O76082 557 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 RAB3DO95716 219 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 PMP2P02689 132 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 IFNA6P05013 189 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 CD40LGP29965 261 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 FCGR2CP31995 323 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 FAUP35544 74 aaKnown RBP7.07□□□□□ -1.28
SYNE1-214ENST00000454018 GPR12P47775 334 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 RFX2P48378 723 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 LUMP51884 338 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-214ENST00000454018 HERV-K104P61576 105 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 TSPAN5P62079 268 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 ZNF816Q0VGE8 651 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-214ENST00000454018 SSX2Q16385 188 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 DEFB112Q30KQ8 113 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 LDLRAD2Q5SZI1 272 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 STEAP1BQ6NZ63 245 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 RBMS3Q6XE24 437 aaKnown RBP7.07□□□□□ -1.28
SYNE1-214ENST00000454018 TMEM17Q86X19 198 aa7.07□□□□□ -1.28
SYNE1-214ENST00000454018 OR8H3Q8N146 312 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms