RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 WASHC3Q9Y3C0 194 aa12.19□□□□□ -0.46
LIMS1-210ENST00000449684 RBM7Q9Y580 266 aaKnown RBP12.19□□□□□ -0.46
LIMS1-210ENST00000449684 WSB1Q9Y6I7 421 aa12.19□□□□□ -0.46
LIMS1-210ENST00000449684 RBBP9O75884 186 aa12.18□□□□□ -0.46
LIMS1-210ENST00000449684 HLA-DRB1P01911 266 aa12.18□□□□□ -0.46
LIMS1-210ENST00000449684 APOA2P02652 100 aa12.18□□□□□ -0.46
LIMS1-210ENST00000449684 IGF1P05019 195 aa12.18□□□□□ -0.46
LIMS1-210ENST00000449684 FCGR3AP08637 254 aa12.18□□□□□ -0.46
LIMS1-210ENST00000449684 LCNL1Q6ZST4 164 aa12.18□□□□□ -0.46
LIMS1-210ENST00000449684 TPRA1Q86W33 373 aa12.18□□□□□ -0.46
LIMS1-210ENST00000449684 LINC00482Q8N8I6 264 aa12.18□□□□□ -0.46
LIMS1-210ENST00000449684 DRAXINQ8NBI3 349 aaPredicted RBP12.18□□□□□ -0.46
LIMS1-210ENST00000449684 PTX4Q96A99 478 aa12.18□□□□□ -0.46
LIMS1-210ENST00000449684 GINS4Q9BRT9 223 aa12.18□□□□□ -0.46
LIMS1-210ENST00000449684 AGMATQ9BSE5 352 aa12.18□□□□□ -0.46
LIMS1-210ENST00000449684 CENPOQ9BU64 300 aa12.18□□□□□ -0.46
LIMS1-210ENST00000449684 MCRIP2Q9BUT9 160 aaKnown RBP12.18□□□□□ -0.46
LIMS1-210ENST00000449684 OR51J1Q9H342 316 aa12.18□□□□□ -0.46
LIMS1-210ENST00000449684 H0YJW9 148 aa12.17□□□□□ -0.46
LIMS1-210ENST00000449684 CCL24O00175 119 aa12.17□□□□□ -0.46
LIMS1-210ENST00000449684 RAB27BO00194 218 aa12.17□□□□□ -0.46
LIMS1-210ENST00000449684 RRHO14718 337 aa12.17□□□□□ -0.46
LIMS1-210ENST00000449684 IGHG4P01861 327 aa12.17□□□□□ -0.46
LIMS1-210ENST00000449684 TFAP2AP05549 437 aa12.17□□□□□ -0.46
LIMS1-210ENST00000449684 GSTT2P0CG29 244 aa12.17□□□□□ -0.46
LIMS1-210ENST00000449684 GSTT2BP0CG30 244 aa12.17□□□□□ -0.46
LIMS1-210ENST00000449684 RPS16P62249 146 aaKnown RBP12.17□□□□□ -0.46
LIMS1-210ENST00000449684 NEDD8Q15843 81 aa12.17□□□□□ -0.46
LIMS1-210ENST00000449684 OR8U1Q8NH10 309 aa12.17□□□□□ -0.46
LIMS1-210ENST00000449684 MAFIPQ8WZ33 124 aa12.17□□□□□ -0.46
LIMS1-210ENST00000449684 DUX3Q96PT4 197 aa12.17□□□□□ -0.46
LIMS1-210ENST00000449684 FBXL15Q9H469 300 aa12.17□□□□□ -0.46
LIMS1-210ENST00000449684 AURKAIP1Q9NWT8 199 aaPredicted RBP12.17□□□□□ -0.46
LIMS1-210ENST00000449684 ZNF230Q9UIE0 474 aaPredicted RBP12.17□□□□□ -0.46
LIMS1-210ENST00000449684 DAPK2Q9UIK4 370 aa12.17□□□□□ -0.46
LIMS1-210ENST00000449684 KCNK7Q9Y2U2 307 aa12.17□□□□□ -0.46
LIMS1-210ENST00000449684 RRP15Q9Y3B9 282 aaKnown RBP12.17□□□□□ -0.46
LIMS1-210ENST00000449684 IGHV7-81A0A0B4J1V7 117 aa12.16□□□□□ -0.46
LIMS1-210ENST00000449684 TRAV41A0A0B4J266 112 aa12.16□□□□□ -0.46
LIMS1-210ENST00000449684 IGKV1-6A0A0C4DH72 117 aa12.16□□□□□ -0.46
LIMS1-210ENST00000449684 LOC100506127A0A0U1RQW1 187 aa12.16□□□□□ -0.46
LIMS1-210ENST00000449684 M0R1X1 148 aa12.16□□□□□ -0.46
LIMS1-210ENST00000449684 MFNGO00587 321 aa12.16□□□□□ -0.46
LIMS1-210ENST00000449684 ATP6V0E1O15342 81 aa12.16□□□□□ -0.46
LIMS1-210ENST00000449684 NDUFA3O95167 84 aa12.16□□□□□ -0.46
LIMS1-210ENST00000449684 OR8U9P0C7N5 309 aa12.16□□□□□ -0.46
LIMS1-210ENST00000449684 CDX1P47902 265 aaPredicted RBP12.16□□□□□ -0.46
LIMS1-210ENST00000449684 CBX3Q13185 183 aa12.16□□□□□ -0.46
LIMS1-210ENST00000449684 CDNFQ49AH0 187 aa12.16□□□□□ -0.46
LIMS1-210ENST00000449684 IGSF11Q5DX21 431 aa12.16□□□□□ -0.46
LIMS1-210ENST00000449684 ETV3LQ6ZN32 361 aa12.16□□□□□ -0.46
LIMS1-210ENST00000449684 OR5AN1Q8NGI8 311 aa12.16□□□□□ -0.46
LIMS1-210ENST00000449684 TSNAXQ99598 290 aaKnown RBP12.16□□□□□ -0.46
LIMS1-210ENST00000449684 RNF5Q99942 180 aa12.16□□□□□ -0.46
LIMS1-210ENST00000449684 OR2D2Q9H210 308 aa12.16□□□□□ -0.46
LIMS1-210ENST00000449684 OR51E2Q9H255 320 aa12.16□□□□□ -0.46
LIMS1-210ENST00000449684 ZNF580Q9UK33 172 aa12.16□□□□□ -0.46
LIMS1-210ENST00000449684 PRKDCP78527 4128 aaKnown RBP12.15□□□□□ -0.46
LIMS1-210ENST00000449684 G3V318 75 aa12.15□□□□□ -0.46
LIMS1-210ENST00000449684 SCGNO76038 276 aa12.15□□□□□ -0.46
LIMS1-210ENST00000449684 CFHR3Q02985 330 aa12.15□□□□□ -0.46
LIMS1-210ENST00000449684 MXD1Q05195 221 aa12.15□□□□□ -0.46
LIMS1-210ENST00000449684 TMEM267Q0VDI3 215 aaPredicted RBP12.15□□□□□ -0.46
LIMS1-210ENST00000449684 ECSCRQ19T08 205 aa12.15□□□□□ -0.46
LIMS1-210ENST00000449684 ZNF660Q6AZW8 331 aaPredicted RBP12.15□□□□□ -0.46
LIMS1-210ENST00000449684 NR2C2APQ86WQ0 139 aa12.15□□□□□ -0.46
LIMS1-210ENST00000449684 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.15□□□□□ -0.46
LIMS1-210ENST00000449684 CLCC1Q96S66 551 aa12.15□□□□□ -0.46
LIMS1-210ENST00000449684 METTL1Q9UBP6 276 aaKnown RBP12.15□□□□□ -0.46
LIMS1-210ENST00000449684 A3GALT2U3KPV4 340 aa12.15□□□□□ -0.46
LIMS1-210ENST00000449684 SNRPBP14678 240 aaKnown RBP12.14□□□□□ -0.47
LIMS1-210ENST00000449684 CD36P16671 472 aa12.14□□□□□ -0.47
LIMS1-210ENST00000449684 PSMB8P28062 276 aa12.14□□□□□ -0.47
LIMS1-210ENST00000449684 CD40LGP29965 261 aa12.14□□□□□ -0.47
LIMS1-210ENST00000449684 SDC2P34741 201 aa12.14□□□□□ -0.47
LIMS1-210ENST00000449684 CX3CL1P78423 397 aa12.14□□□□□ -0.47
LIMS1-210ENST00000449684 DEFB136Q30KP8 78 aa12.14□□□□□ -0.47
LIMS1-210ENST00000449684 KCTD21Q4G0X4 260 aa12.14□□□□□ -0.47
LIMS1-210ENST00000449684 SFXN4Q6P4A7 337 aa12.14□□□□□ -0.47
LIMS1-210ENST00000449684 PDPNQ86YL7 162 aa12.14□□□□□ -0.47
LIMS1-210ENST00000449684 RNF152Q8N8N0 203 aa12.14□□□□□ -0.47
LIMS1-210ENST00000449684 FLYWCH2Q96CP2 140 aaKnown RBP12.14□□□□□ -0.47
LIMS1-210ENST00000449684 RAX2Q96IS3 184 aa12.14□□□□□ -0.47
LIMS1-210ENST00000449684 P2RX4Q99571 388 aa12.14□□□□□ -0.47
LIMS1-210ENST00000449684 CABLES2Q9BTV7 478 aa12.14□□□□□ -0.47
LIMS1-210ENST00000449684 ST6GALNAC5Q9BVH7 336 aa12.14□□□□□ -0.47
LIMS1-210ENST00000449684 VCX3AQ9NNX9 186 aa12.14□□□□□ -0.47
LIMS1-210ENST00000449684 SLC35D1Q9NTN3 355 aa12.14□□□□□ -0.47
LIMS1-210ENST00000449684 ZMAT5Q9UDW3 170 aaKnown RBP12.14□□□□□ -0.47
LIMS1-210ENST00000449684 TRBV6-7A0A0A0MS04 114 aa12.13□□□□□ -0.47
LIMS1-210ENST00000449684 A0A1W2PN81 502 aa12.13□□□□□ -0.47
LIMS1-210ENST00000449684 DIRAS3O95661 229 aa12.13□□□□□ -0.47
LIMS1-210ENST00000449684 DTYMKP23919 212 aa12.13□□□□□ -0.47
LIMS1-210ENST00000449684 PPIFP30405 207 aaKnown RBP12.13□□□□□ -0.47
LIMS1-210ENST00000449684 HOXD3P31249 432 aaPredicted RBP12.13□□□□□ -0.47
LIMS1-210ENST00000449684 CHRNA7P36544 502 aa12.13□□□□□ -0.47
LIMS1-210ENST00000449684 GNG2P59768 71 aa12.13□□□□□ -0.47
LIMS1-210ENST00000449684 PITPNAQ00169 270 aa12.13□□□□□ -0.47
LIMS1-210ENST00000449684 SRSF7Q16629 238 aaKnown RBP eCLIP12.13□□□□□ -0.47
LIMS1-210ENST00000449684 IDNKQ5T6J7 187 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms