RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 H7C2Y5 167 aa11.98□□□□□ -0.49
LIMS3-201ENST00000437679 NBR2O15453 112 aa11.98□□□□□ -0.49
LIMS3-201ENST00000437679 GNG2P59768 71 aa11.98□□□□□ -0.49
LIMS3-201ENST00000437679 GLDNQ6ZMI3 551 aaPredicted RBP11.98□□□□□ -0.49
LIMS3-201ENST00000437679 CROCCP3Q8IVE0 287 aa11.98□□□□□ -0.49
LIMS3-201ENST00000437679 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.98□□□□□ -0.49
LIMS3-201ENST00000437679 OR5AN1Q8NGI8 311 aa11.98□□□□□ -0.49
LIMS3-201ENST00000437679 OR5H6Q8NGV6 325 aa11.98□□□□□ -0.49
LIMS3-201ENST00000437679 RITA1Q96K30 269 aa11.98□□□□□ -0.49
LIMS3-201ENST00000437679 HSPB9Q9BQS6 159 aa11.98□□□□□ -0.49
LIMS3-201ENST00000437679 ST6GALNAC5Q9BVH7 336 aa11.98□□□□□ -0.49
LIMS3-201ENST00000437679 ELF5Q9UKW6 265 aaPredicted RBP11.98□□□□□ -0.49
LIMS3-201ENST00000437679 TMEM235A6NFC5 223 aa11.97□□□□□ -0.49
LIMS3-201ENST00000437679 RBBP9O75884 186 aa11.97□□□□□ -0.49
LIMS3-201ENST00000437679 PF4P02776 101 aa11.97□□□□□ -0.49
LIMS3-201ENST00000437679 TFAP2AP05549 437 aa11.97□□□□□ -0.49
LIMS3-201ENST00000437679 OR8U9P0C7N5 309 aa11.97□□□□□ -0.49
LIMS3-201ENST00000437679 VDAC1P21796 283 aa11.97□□□□□ -0.49
LIMS3-201ENST00000437679 CNTFRP26992 372 aa11.97□□□□□ -0.49
LIMS3-201ENST00000437679 PNLIPRP3Q17RR3 467 aa11.97□□□□□ -0.49
LIMS3-201ENST00000437679 C5orf64Q2M2E5 130 aa11.97□□□□□ -0.49
LIMS3-201ENST00000437679 ZNF260Q3ZCT1 412 aa11.97□□□□□ -0.49
LIMS3-201ENST00000437679 TEX38Q6PEX7 206 aa11.97□□□□□ -0.49
LIMS3-201ENST00000437679 DRAXINQ8NBI3 349 aaPredicted RBP11.97□□□□□ -0.49
LIMS3-201ENST00000437679 NPBQ8NG41 125 aa11.97□□□□□ -0.49
LIMS3-201ENST00000437679 OR8U1Q8NH10 309 aa11.97□□□□□ -0.49
LIMS3-201ENST00000437679 DCSTAMPQ9H295 470 aa11.97□□□□□ -0.49
LIMS3-201ENST00000437679 ZFP57Q9NU63 452 aa11.97□□□□□ -0.49
LIMS3-201ENST00000437679 RBM7Q9Y580 266 aaKnown RBP11.97□□□□□ -0.49
LIMS3-201ENST00000437679 A0A0A6YYH2 397 aa11.96□□□□□ -0.49
LIMS3-201ENST00000437679 A6NJ64 397 aa11.96□□□□□ -0.49
LIMS3-201ENST00000437679 TRIM64CA6NLI5 447 aa11.96□□□□□ -0.49
LIMS3-201ENST00000437679 M0R1X1 148 aa11.96□□□□□ -0.49
LIMS3-201ENST00000437679 HLA-DRB1P01911 266 aa11.96□□□□□ -0.49
LIMS3-201ENST00000437679 APOA2P02652 100 aa11.96□□□□□ -0.49
LIMS3-201ENST00000437679 OR5H8P0DN80 308 aa11.96□□□□□ -0.49
LIMS3-201ENST00000437679 LSM3P62310 102 aaKnown RBP11.96□□□□□ -0.49
LIMS3-201ENST00000437679 RPL23AP62750 156 aaKnown RBP11.96□□□□□ -0.49
LIMS3-201ENST00000437679 LIN54Q6MZP7 749 aa11.96□□□□□ -0.49
LIMS3-201ENST00000437679 C1QL4Q86Z23 238 aa11.96□□□□□ -0.49
LIMS3-201ENST00000437679 NUDCD2Q8WVJ2 157 aa11.96□□□□□ -0.49
LIMS3-201ENST00000437679 SLC25A38Q96DW6 304 aa11.96□□□□□ -0.49
LIMS3-201ENST00000437679 RNF5Q99942 180 aa11.96□□□□□ -0.49
LIMS3-201ENST00000437679 OR2D2Q9H210 308 aa11.96□□□□□ -0.49
LIMS3-201ENST00000437679 GAB2Q9UQC2 676 aa11.96□□□□□ -0.49
LIMS3-201ENST00000437679 TRAV18A0A075B6X5 111 aa11.95□□□□□ -0.5
LIMS3-201ENST00000437679 IGKV1D-8A0A087WSZ0 117 aa11.95□□□□□ -0.5
LIMS3-201ENST00000437679 NUDT19A8MXV4 375 aa11.95□□□□□ -0.5
LIMS3-201ENST00000437679 PROP1O75360 226 aa11.95□□□□□ -0.5
LIMS3-201ENST00000437679 NDUFA3O95167 84 aa11.95□□□□□ -0.5
LIMS3-201ENST00000437679 IGF1P05019 195 aa11.95□□□□□ -0.5
LIMS3-201ENST00000437679 CTXN2P0C2S0 81 aa11.95□□□□□ -0.5
LIMS3-201ENST00000437679 TGFBR1P36897 503 aa11.95□□□□□ -0.5
LIMS3-201ENST00000437679 PLGLAQ15195 96 aa11.95□□□□□ -0.5
LIMS3-201ENST00000437679 CXorf66Q5JRM2 361 aaPredicted RBP11.95□□□□□ -0.5
LIMS3-201ENST00000437679 ZNF383Q8NA42 475 aa11.95□□□□□ -0.5
LIMS3-201ENST00000437679 OR51J1Q9H342 316 aa11.95□□□□□ -0.5
LIMS3-201ENST00000437679 DIABLOQ9NR28 239 aa11.95□□□□□ -0.5
LIMS3-201ENST00000437679 ZNF580Q9UK33 172 aa11.95□□□□□ -0.5
LIMS3-201ENST00000437679 SPATA2Q9UM82 520 aa11.95□□□□□ -0.5
LIMS3-201ENST00000437679 G3V4G9 280 aa11.94□□□□□ -0.5
LIMS3-201ENST00000437679 RRHO14718 337 aa11.94□□□□□ -0.5
LIMS3-201ENST00000437679 ELANEP08246 267 aa11.94□□□□□ -0.5
LIMS3-201ENST00000437679 CD33P20138 364 aa11.94□□□□□ -0.5
LIMS3-201ENST00000437679 SLC6A1P30531 599 aa11.94□□□□□ -0.5
LIMS3-201ENST00000437679 RPS19P39019 145 aaKnown RBP11.94□□□□□ -0.5
LIMS3-201ENST00000437679 FOXE3Q13461 319 aa11.94□□□□□ -0.5
LIMS3-201ENST00000437679 PDPNQ86YL7 162 aa11.94□□□□□ -0.5
LIMS3-201ENST00000437679 H1FOOQ8IZA3 346 aaPredicted RBP11.94□□□□□ -0.5
LIMS3-201ENST00000437679 TSNAXQ99598 290 aaKnown RBP11.94□□□□□ -0.5
LIMS3-201ENST00000437679 PARP11Q9NR21 331 aa11.94□□□□□ -0.5
LIMS3-201ENST00000437679 SDHAF2Q9NX18 166 aa11.94□□□□□ -0.5
LIMS3-201ENST00000437679 IGHV7-81A0A0B4J1V7 117 aa11.93□□□□□ -0.5
LIMS3-201ENST00000437679 WIPF1O43516 503 aa11.93□□□□□ -0.5
LIMS3-201ENST00000437679 SSX5O60225 188 aa11.93□□□□□ -0.5
LIMS3-201ENST00000437679 LINC00205P59089 165 aa11.93□□□□□ -0.5
LIMS3-201ENST00000437679 RPS16P62249 146 aaKnown RBP11.93□□□□□ -0.5
LIMS3-201ENST00000437679 TAGLNQ01995 201 aaKnown RBP11.93□□□□□ -0.5
LIMS3-201ENST00000437679 CBX3Q13185 183 aa11.93□□□□□ -0.5
LIMS3-201ENST00000437679 SAMD5Q5TGI4 173 aa11.93□□□□□ -0.5
LIMS3-201ENST00000437679 CNIH2Q6PI25 160 aa11.93□□□□□ -0.5
LIMS3-201ENST00000437679 KLHL30-AS1Q8NEE0 82 aa11.93□□□□□ -0.5
LIMS3-201ENST00000437679 FLYWCH2Q96CP2 140 aaKnown RBP11.93□□□□□ -0.5
LIMS3-201ENST00000437679 S100A16Q96FQ6 103 aaKnown RBP11.93□□□□□ -0.5
LIMS3-201ENST00000437679 FUNDC2Q9BWH2 189 aa11.93□□□□□ -0.5
LIMS3-201ENST00000437679 FBXL15Q9H469 300 aa11.93□□□□□ -0.5
LIMS3-201ENST00000437679 SLC35D1Q9NTN3 355 aa11.93□□□□□ -0.5
LIMS3-201ENST00000437679 WSB1Q9Y6I7 421 aa11.93□□□□□ -0.5
LIMS3-201ENST00000437679 ATP6V0E1O15342 81 aa11.92□□□□□ -0.5
LIMS3-201ENST00000437679 SPDEFO95238 335 aa11.92□□□□□ -0.5
LIMS3-201ENST00000437679 IGHG4P01861 327 aa11.92□□□□□ -0.5
LIMS3-201ENST00000437679 IGKV1-16P04430 117 aa11.92□□□□□ -0.5
LIMS3-201ENST00000437679 RPLP1P05386 114 aaKnown RBP11.92□□□□□ -0.5
LIMS3-201ENST00000437679 THBS3P49746 956 aa11.92□□□□□ -0.5
LIMS3-201ENST00000437679 CFHR3Q02985 330 aa11.92□□□□□ -0.5
LIMS3-201ENST00000437679 UBE2NLQ5JXB2 153 aa11.92□□□□□ -0.5
LIMS3-201ENST00000437679 ZNF660Q6AZW8 331 aaPredicted RBP11.92□□□□□ -0.5
LIMS3-201ENST00000437679 ZNF695Q8IW36 515 aa11.92□□□□□ -0.5
LIMS3-201ENST00000437679 WFDC9Q8NEX5 89 aa11.92□□□□□ -0.5
LIMS3-201ENST00000437679 OR13F1Q8NGS4 319 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms