RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 IGHV2-5P01817 119 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 EGR1P18146 543 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 TNFRSF1AP19438 455 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 CEBPDP49716 269 aaPredicted RBP10.4□□□□□ -0.74
CIITA-202ENST00000381835 IL13RA2Q14627 380 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 ACP7Q6ZNF0 438 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 TMEM182Q6ZP80 229 aaPredicted RBP10.4□□□□□ -0.74
CIITA-202ENST00000381835 LINC00596Q86U02 117 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 TGIF2LYQ8IUE0 185 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 ZNF565Q8N9K5 539 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 NEK7Q8TDX7 302 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 POM121Q96HA1 1249 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 SAP30LQ9HAJ7 183 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 KIAA2026Q5HYC2 2103 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 A0A1W2PPR1 153 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 SRRM5B3KS81 715 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 SIRPB1O00241 398 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 ST8SIA3O43173 380 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 ADH4P08319 380 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 DTYMKP23919 212 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 SRSF1Q07955 248 aaKnown RBP eCLIP10.4□□□□□ -0.74
CIITA-202ENST00000381835 SMIM21Q3B7S5 101 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 GCSAMQ8N6F7 178 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 FAM213BQ8TBF2 198 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 C18orf12Q96KH6 178 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 OR51M1Q9H341 326 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 SLC2A9Q9NRM0 540 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 MIOXQ9UGB7 285 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 DSCAMO60469 2012 aa10.4□□□□□ -0.75
CIITA-202ENST00000381835 TRAV24A0A0B4J272 114 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 AP4M1O00189 453 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 SH2D1BO14796 132 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 OR2H2O95918 312 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 CYB5R3P00387 301 aaPredicted RBP10.39□□□□□ -0.75
CIITA-202ENST00000381835 TFF1P04155 84 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 CD55P08174 381 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 OR8U8P0C7N1 319 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 ZNF146Q15072 292 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 TESK1Q15569 626 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 ANKRD39Q53RE8 183 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 SPIN3Q5JUX0 258 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 FAM201AQ5SY85 155 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 Q6P435 159 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 LGI3Q8N145 548 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 LRTM2Q8N967 370 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 SUMF2Q8NBJ7 301 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 RCL1Q9Y2P8 373 aaKnown RBP10.39□□□□□ -0.75
CIITA-202ENST00000381835 PHF1O43189 567 aaPredicted RBP10.39□□□□□ -0.75
CIITA-202ENST00000381835 HAND1O96004 215 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 S100PP25815 95 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 PPP1CCP36873 323 aaKnown RBP10.39□□□□□ -0.75
CIITA-202ENST00000381835 CFHR2P36980 270 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 CLINT1Q14677 625 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 GNMTQ14749 295 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 LFNGQ8NES3 379 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 MALSU1Q96EH3 234 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 RNF7Q9UBF6 113 aa10.39□□□□□ -0.75
CIITA-202ENST00000381835 PUS1Q9Y606 427 aaKnown RBP eCLIP10.39□□□□□ -0.75
CIITA-202ENST00000381835 USF3Q68DE3 2245 aa10.38□□□□□ -0.75
CIITA-202ENST00000381835 IGHV3OR15-7A0A075B7D8 119 aa10.38□□□□□ -0.75
CIITA-202ENST00000381835 A6NNC1 897 aa10.38□□□□□ -0.75
CIITA-202ENST00000381835 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.38□□□□□ -0.75
CIITA-202ENST00000381835 CLN5O75503 358 aa10.38□□□□□ -0.75
CIITA-202ENST00000381835 OR2C1O95371 312 aa10.38□□□□□ -0.75
CIITA-202ENST00000381835 IFNA17P01571 189 aa10.38□□□□□ -0.75
CIITA-202ENST00000381835 OR11L1Q8NGX0 322 aa10.38□□□□□ -0.75
CIITA-202ENST00000381835 MSI2Q96DH6 328 aaKnown RBP10.38□□□□□ -0.75
CIITA-202ENST00000381835 LHBP01229 141 aa10.38□□□□□ -0.75
CIITA-202ENST00000381835 SOD3P08294 240 aa10.38□□□□□ -0.75
CIITA-202ENST00000381835 IRF2P14316 349 aa10.38□□□□□ -0.75
CIITA-202ENST00000381835 SOHLH1Q5JUK2 328 aa10.38□□□□□ -0.75
CIITA-202ENST00000381835 UBTD1Q9HAC8 227 aa10.38□□□□□ -0.75
CIITA-202ENST00000381835 CRYBG3Q68DQ2 2970 aa10.37□□□□□ -0.75
CIITA-202ENST00000381835 SLC33A1O00400 549 aaPredicted RBP10.37□□□□□ -0.75
CIITA-202ENST00000381835 GPR37O15354 613 aa10.37□□□□□ -0.75
CIITA-202ENST00000381835 LMO1P25800 156 aa10.37□□□□□ -0.75
CIITA-202ENST00000381835 EWSR1Q01844 656 aaKnown RBP eCLIP10.37□□□□□ -0.75
CIITA-202ENST00000381835 CCDC71LQ8N9Z2 235 aa10.37□□□□□ -0.75
CIITA-202ENST00000381835 Q8TCH9 128 aa10.37□□□□□ -0.75
CIITA-202ENST00000381835 CCL17Q92583 94 aa10.37□□□□□ -0.75
CIITA-202ENST00000381835 RARRES2Q99969 163 aa10.37□□□□□ -0.75
CIITA-202ENST00000381835 ZNF286AQ9HBT8 521 aa10.37□□□□□ -0.75
CIITA-202ENST00000381835 CBLN4Q9NTU7 201 aa10.37□□□□□ -0.75
CIITA-202ENST00000381835 TMED3Q9Y3Q3 217 aa10.37□□□□□ -0.75
CIITA-202ENST00000381835 WIPI2Q9Y4P8 454 aa10.37□□□□□ -0.75
CIITA-202ENST00000381835 A1L4Q6 167 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 K7N7A8 449 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 PSG2P11465 335 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 GABRA2P47869 451 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 SLC35G3Q8N808 338 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 DEFB108BQ8NET1 73 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 TMPRSS5Q9H3S3 457 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 LAMP3Q9UQV4 416 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 RAI1Q7Z5J4 1906 aaPredicted RBP10.36□□□□□ -0.75
CIITA-202ENST00000381835 A0A1B0GW64 132 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 LRRC30A6NM36 301 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 PSPNO60542 156 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 SELLP14151 372 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 HERV-K104P61576 105 aa10.36□□□□□ -0.75
CIITA-202ENST00000381835 OR2C3Q8N628 320 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms