RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 OR5T1Q8NG75 326 aa11.92□□□□□ -0.5
CLCNKA-202ENST00000375692 OR5P3Q8WZ94 311 aa11.92□□□□□ -0.5
CLCNKA-202ENST00000375692 APOBEC3DQ96AK3 386 aaPredicted RBP11.92□□□□□ -0.5
CLCNKA-202ENST00000375692 PYGO2Q9BRQ0 406 aa11.92□□□□□ -0.5
CLCNKA-202ENST00000375692 URB1O60287 2271 aaKnown RBP11.92□□□□□ -0.5
CLCNKA-202ENST00000375692 PPP5D1E7EU14 171 aa11.92□□□□□ -0.5
CLCNKA-202ENST00000375692 IFNL4K9M1U5 179 aa11.92□□□□□ -0.5
CLCNKA-202ENST00000375692 DEGS1O15121 323 aa11.92□□□□□ -0.5
CLCNKA-202ENST00000375692 CLDN1O95832 211 aa11.92□□□□□ -0.5
CLCNKA-202ENST00000375692 PAX1P15863 534 aa11.92□□□□□ -0.5
CLCNKA-202ENST00000375692 FGF7P21781 194 aa11.92□□□□□ -0.5
CLCNKA-202ENST00000375692 PINX1Q96BK5 328 aaKnown RBP11.92□□□□□ -0.5
CLCNKA-202ENST00000375692 PARLQ9H300 379 aa11.92□□□□□ -0.5
CLCNKA-202ENST00000375692 MED12LQ86YW9 2145 aa11.92□□□□□ -0.5
CLCNKA-202ENST00000375692 SIRPB1O00241 398 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 CELA3AP09093 270 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 USF2Q15853 346 aaPredicted RBP11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 FAM53AQ6NSI3 398 aaPredicted RBP11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 FGFRL1Q8N441 504 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 OR4F5Q8NH21 305 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 WFIKKN1Q96NZ8 548 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 OR4F4Q96R69 305 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 FUT9Q9Y231 359 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 CACNA1DQ01668 2161 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 TRBV6-6A0A0A6YYG2 114 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 MKRN2OSH3BPM6 223 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 ST8SIA5O15466 376 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 IL18BPO95998 194 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 CA6P23280 308 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 GFRA1P56159 465 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 SRSF6Q13247 344 aaKnown RBP11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 SSPNQ14714 243 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 Q3ZCU0 254 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 SPATA46Q5T0L3 261 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 SPINK14Q6IE38 97 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 RNASEH2CQ8TDP1 164 aaKnown RBP11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 OR5B12Q96R08 314 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 AGMATQ9BSE5 352 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 MED13Q9UHV7 2174 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 DNAJC13O75165 2243 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 NBEAQ8NFP9 2946 aa11.91□□□□□ -0.5
CLCNKA-202ENST00000375692 IDH3GP51553 393 aaPredicted RBP11.9□□□□□ -0.5
CLCNKA-202ENST00000375692 PMP22Q01453 160 aa11.9□□□□□ -0.5
CLCNKA-202ENST00000375692 ATP1A1-AS1Q5TC04 95 aa11.9□□□□□ -0.5
CLCNKA-202ENST00000375692 TRAPPC2LQ9UL33 140 aa11.9□□□□□ -0.5
CLCNKA-202ENST00000375692 USF3Q68DE3 2245 aa11.9□□□□□ -0.5
CLCNKA-202ENST00000375692 RAMP3O60896 148 aa11.9□□□□□ -0.5
CLCNKA-202ENST00000375692 CEACAM6P40199 344 aa11.9□□□□□ -0.5
CLCNKA-202ENST00000375692 PSMB3P49720 205 aa11.9□□□□□ -0.5
CLCNKA-202ENST00000375692 GNB2P62879 340 aa11.9□□□□□ -0.5
CLCNKA-202ENST00000375692 ACSF3Q4G176 576 aaPredicted RBP11.9□□□□□ -0.5
CLCNKA-202ENST00000375692 DRAM1Q8N682 238 aa11.9□□□□□ -0.5
CLCNKA-202ENST00000375692 ACTR3CQ9C0K3 210 aaPredicted RBP11.9□□□□□ -0.5
CLCNKA-202ENST00000375692 AURKAIP1Q9NWT8 199 aaPredicted RBP11.9□□□□□ -0.5
CLCNKA-202ENST00000375692 CLN8Q9UBY8 286 aa11.9□□□□□ -0.5
CLCNKA-202ENST00000375692 KRASP01116 189 aa11.89□□□□□ -0.51
CLCNKA-202ENST00000375692 BMP5P22003 454 aa11.89□□□□□ -0.51
CLCNKA-202ENST00000375692 Q6P435 159 aa11.89□□□□□ -0.51
CLCNKA-202ENST00000375692 VASH2Q86V25 355 aa11.89□□□□□ -0.51
CLCNKA-202ENST00000375692 TGIF2LXQ8IUE1 241 aa11.89□□□□□ -0.51
CLCNKA-202ENST00000375692 POM121L2Q96KW2 1035 aa11.89□□□□□ -0.51
CLCNKA-202ENST00000375692 DOCK10Q96BY6 2186 aa11.89□□□□□ -0.51
CLCNKA-202ENST00000375692 TNRC6AQ8NDV7 1962 aaKnown RBP11.89□□□□□ -0.51
CLCNKA-202ENST00000375692 ANKRD30BLA7E2S9 258 aa11.89□□□□□ -0.51
CLCNKA-202ENST00000375692 GNG3P63215 75 aa11.89□□□□□ -0.51
CLCNKA-202ENST00000375692 PMS2P11Q13670 270 aa11.89□□□□□ -0.51
CLCNKA-202ENST00000375692 SSX2Q16385 188 aa11.89□□□□□ -0.51
CLCNKA-202ENST00000375692 TMEM14EPQ6UXP3 125 aa11.89□□□□□ -0.51
CLCNKA-202ENST00000375692 ZNF573Q86YE8 665 aa11.89□□□□□ -0.51
CLCNKA-202ENST00000375692 OR10G9Q8NGN4 311 aa11.89□□□□□ -0.51
CLCNKA-202ENST00000375692 OR10G7Q8NGN6 311 aa11.89□□□□□ -0.51
CLCNKA-202ENST00000375692 TMEM45BQ96B21 275 aa11.89□□□□□ -0.51
CLCNKA-202ENST00000375692 PRRC2CQ9Y520 2896 aaKnown RBP11.89□□□□□ -0.51
CLCNKA-202ENST00000375692 PAGE4O60829 102 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 SS18L1O75177 396 aaPredicted RBP11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 GYPAP02724 150 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 OR4A8P0C604 315 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 EGR1P18146 543 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 G6PCP35575 357 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 CHRNA7P36544 502 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 WNT5AP41221 380 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 FAM3BP58499 235 aaPredicted RBP11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 TNFRSF9Q07011 255 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 TFF3Q07654 80 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 GTF3C1Q12789 2109 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 CENPVQ7Z7K6 275 aaPredicted RBP11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 C2orf88Q9BSF0 95 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 OR51I2Q9H344 312 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 LIN7CQ9NUP9 197 aaKnown RBP11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 C1QTNF9BB2RNN3 333 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 HRASP01112 189 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 ZNF816Q0VGE8 651 aaPredicted RBP11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 NRN1LQ496H8 165 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 SPINK9Q5DT21 86 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 COA6Q5JTJ3 125 aaKnown RBP11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 TGIF2LYQ8IUE0 185 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 TMEM170AQ8WVE7 144 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 RAB24Q969Q5 203 aa11.88□□□□□ -0.51
CLCNKA-202ENST00000375692 OR2H2O95918 312 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms