RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 CBLN1P23435 193 aa9.46□□□□□ -0.89
CLN3-244ENST00000636147 RANP62826 216 aaKnown RBP9.46□□□□□ -0.89
CLN3-244ENST00000636147 CYP2G1PQ6ZSU1 146 aa9.46□□□□□ -0.89
CLN3-244ENST00000636147 TCF23Q7RTU1 214 aa9.46□□□□□ -0.89
CLN3-244ENST00000636147 APH1AQ96BI3 265 aa9.46□□□□□ -0.89
CLN3-244ENST00000636147 P2RX4Q99571 388 aa9.46□□□□□ -0.89
CLN3-244ENST00000636147 ZNF331Q9NQX6 463 aaPredicted RBP9.46□□□□□ -0.89
CLN3-244ENST00000636147 GPR179Q6PRD1 2367 aa9.46□□□□□ -0.89
CLN3-244ENST00000636147 ZNF106Q9H2Y7 1883 aaKnown RBP9.46□□□□□ -0.89
CLN3-244ENST00000636147 IGKV1-27A0A075B6S5 117 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 IFITM10A6NMD0 228 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 C1QTNF9BB2RNN3 333 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 M0QZK8 103 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 GGCTO75223 188 aaKnown RBP9.46□□□□□ -0.9
CLN3-244ENST00000636147 CER1O95813 267 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 CEACAM1P13688 526 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 GNG3P63215 75 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 RPP30P78346 268 aaKnown RBP9.46□□□□□ -0.9
CLN3-244ENST00000636147 CCL7P80098 99 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 TIGITQ495A1 244 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 MRPL54Q6P161 138 aaKnown RBP9.46□□□□□ -0.9
CLN3-244ENST00000636147 OR5R1Q8NH85 324 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 RBM14Q96PK6 669 aaKnown RBP9.46□□□□□ -0.9
CLN3-244ENST00000636147 CHD3Q12873 2000 aaKnown RBP9.46□□□□□ -0.9
CLN3-244ENST00000636147 A0A1B0GUS0 222 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 TMEM50AO95807 157 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 NGFP01138 241 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 GCNT2Q8N0V5 402 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 ATOH7Q8N100 152 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 OR4C5Q8NGB2 326 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 FAM131CQ96AQ9 280 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 MRPL37Q9BZE1 423 aaKnown RBP9.46□□□□□ -0.9
CLN3-244ENST00000636147 SLC35D1Q9NTN3 355 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 RNF24Q9Y225 148 aa9.46□□□□□ -0.9
CLN3-244ENST00000636147 A8MWP6 167 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 UCP1P25874 307 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 RAC3P60763 192 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 ARG2P78540 354 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 FGFRL1Q8N441 504 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 APOBEC3DQ96AK3 386 aaPredicted RBP9.45□□□□□ -0.9
CLN3-244ENST00000636147 GALMQ96C23 342 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 CCDC74BQ96LY2 380 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 C2orf88Q9BSF0 95 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 ATP23Q9Y6H3 246 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 USF3Q68DE3 2245 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 TRBV24-1A0A075B6N3 115 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 C2CD4DB7Z1M9 353 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 FAM157AC9JC47 383 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 DIRC3C9JPN6 131 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 SH2D1BO14796 132 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 ID3Q02535 119 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 TMEM256Q8N2U0 113 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 CISD2Q8N5K1 135 aaKnown RBP9.45□□□□□ -0.9
CLN3-244ENST00000636147 OR8G5Q8NG78 346 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 TMEM68Q96MH6 324 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 FRMPD3Q5JV73 1810 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 HSBP1L1C9JCN9 74 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 C5orf67F2Z3F1 127 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 GCH1P30793 250 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 TNFSF10P50591 281 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 RAB30Q15771 203 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 LPAL2Q16609 132 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 FAM90A2PQ658T7 463 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 AGBL5Q8NDL9 886 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 OR1L6Q8NGR2 347 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 TECTBQ96PL2 329 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 WDR61Q9GZS3 305 aaKnown RBP9.45□□□□□ -0.9
CLN3-244ENST00000636147 CRISPLD2Q9H0B8 497 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 PSG11Q9UQ72 335 aa9.45□□□□□ -0.9
CLN3-244ENST00000636147 WNK2Q9Y3S1 2297 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 CCL1P22362 96 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 CYB561P49447 251 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 HINT1P49773 126 aaPredicted RBP9.44□□□□□ -0.9
CLN3-244ENST00000636147 MNX1P50219 401 aaPredicted RBP9.44□□□□□ -0.9
CLN3-244ENST00000636147 COL5A1-AS1Q5SY13 56 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 TPRX1Q8N7U7 411 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 MRGPRDQ8TDS7 321 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 ZNF391Q9UJN7 358 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 ARL2-SNX15V9GYD0 113 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 CDIPTO14735 213 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 FCGR3BO75015 233 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 CD82P27701 267 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 ACSM6Q6P461 480 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 LRTM2Q8N967 370 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 PNRC2Q9NPJ4 139 aaKnown RBP9.44□□□□□ -0.9
CLN3-244ENST00000636147 FOXJ2Q9P0K8 574 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 HTTP42858 3142 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.44□□□□□ -0.9
CLN3-244ENST00000636147 IFNL4K9M1U5 179 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 EXT1Q16394 746 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 HLA-DRB5Q30154 266 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 ARSJQ5FYB0 599 aaPredicted RBP9.44□□□□□ -0.9
CLN3-244ENST00000636147 TMPRSS7Q7RTY8 843 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 ZNF525Q8N782 197 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 RTL8AQ9BWD3 113 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 ZNF552Q9H707 407 aaPredicted RBP9.44□□□□□ -0.9
CLN3-244ENST00000636147 TAAR3PQ9P1P4 343 aa9.44□□□□□ -0.9
CLN3-244ENST00000636147 ZG16O60844 167 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 APOA2P02652 100 aa9.43□□□□□ -0.9
CLN3-244ENST00000636147 FGF12P61328 243 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms