RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 GAFA1Q96PS6 74 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 AGMATQ9BSE5 352 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 EGLN1Q9GZT9 426 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 COA4Q9NYJ1 87 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 CACNG5Q9UF02 275 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 MMP24Q9Y5R2 645 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 ZNF705EA8MWA4 302 aaPredicted RBP18.33■□□□□ 0.53
PNKP-220ENST00000627232 SHISA9B4DS77 424 aa18.33■□□□□ 0.53
PNKP-220ENST00000627232 ARID1AO14497 2285 aa18.33■□□□□ 0.53
PNKP-220ENST00000627232 ITGB1BP1O14713 200 aa18.33■□□□□ 0.53
PNKP-220ENST00000627232 EDDM3BP56851 147 aa18.33■□□□□ 0.53
PNKP-220ENST00000627232 BLOC1S1P78537 153 aa18.33■□□□□ 0.53
PNKP-220ENST00000627232 Q6ZRM9 215 aa18.33■□□□□ 0.53
PNKP-220ENST00000627232 ZNF808Q8N4W9 903 aaPredicted RBP18.33■□□□□ 0.53
PNKP-220ENST00000627232 PSG11Q9UQ72 335 aa18.33■□□□□ 0.53
PNKP-220ENST00000627232 TANC2Q9HCD6 1990 aa18.33■□□□□ 0.52
PNKP-220ENST00000627232 FAM90A26D6RGX4 464 aa18.33■□□□□ 0.52
PNKP-220ENST00000627232 CLDN1O95832 211 aa18.33■□□□□ 0.52
PNKP-220ENST00000627232 CHRNB4P30926 498 aa18.33■□□□□ 0.52
PNKP-220ENST00000627232 PAX9P55771 341 aa18.33■□□□□ 0.52
PNKP-220ENST00000627232 RPL23AP62750 156 aaKnown RBP18.33■□□□□ 0.52
PNKP-220ENST00000627232 RPL30P62888 115 aaKnown RBP18.33■□□□□ 0.52
PNKP-220ENST00000627232 KDF1Q8NAX2 398 aaPredicted RBP18.33■□□□□ 0.52
PNKP-220ENST00000627232 CALYQ9NYX4 217 aa18.33■□□□□ 0.52
PNKP-220ENST00000627232 GNG12Q9UBI6 72 aa18.33■□□□□ 0.52
PNKP-220ENST00000627232 DSCAML1Q8TD84 2053 aa18.32■□□□□ 0.52
PNKP-220ENST00000627232 LOXL3P58215 753 aa18.32■□□□□ 0.52
PNKP-220ENST00000627232 CCL8P80075 99 aa18.32■□□□□ 0.52
PNKP-220ENST00000627232 TLE1Q04724 770 aa18.32■□□□□ 0.52
PNKP-220ENST00000627232 ZNF266Q14584 549 aa18.32■□□□□ 0.52
PNKP-220ENST00000627232 MST1LQ2TV78 715 aa18.32■□□□□ 0.52
PNKP-220ENST00000627232 IL34Q6ZMJ4 242 aa18.32■□□□□ 0.52
PNKP-220ENST00000627232 STPG2Q8N412 459 aa18.32■□□□□ 0.52
PNKP-220ENST00000627232 FGFRL1Q8N441 504 aa18.32■□□□□ 0.52
PNKP-220ENST00000627232 TCTEX1D2Q8WW35 142 aa18.32■□□□□ 0.52
PNKP-220ENST00000627232 RNASE6Q93091 150 aaKnown RBP18.32■□□□□ 0.52
PNKP-220ENST00000627232 MMP26Q9NRE1 261 aa18.32■□□□□ 0.52
PNKP-220ENST00000627232 LAMP3Q9UQV4 416 aa18.32■□□□□ 0.52
PNKP-220ENST00000627232 DEFB108AA8MXU0 73 aa18.31■□□□□ 0.52
PNKP-220ENST00000627232 LGALS8O00214 317 aa18.31■□□□□ 0.52
PNKP-220ENST00000627232 CCL21O00585 134 aa18.31■□□□□ 0.52
PNKP-220ENST00000627232 SIGLEC5O15389 551 aa18.31■□□□□ 0.52
PNKP-220ENST00000627232 ST8SIA5O15466 376 aa18.31■□□□□ 0.52
PNKP-220ENST00000627232 FBXO24O75426 580 aa18.31■□□□□ 0.52
PNKP-220ENST00000627232 TMEM50AO95807 157 aa18.31■□□□□ 0.52
PNKP-220ENST00000627232 SPP1P10451 314 aa18.31■□□□□ 0.52
PNKP-220ENST00000627232 C17orf58Q2M2W7 97 aa18.31■□□□□ 0.52
PNKP-220ENST00000627232 TMEM30BQ3MIR4 351 aa18.31■□□□□ 0.52
PNKP-220ENST00000627232 DMRTC2Q8IXT2 367 aaPredicted RBP18.31■□□□□ 0.52
PNKP-220ENST00000627232 PLPPR2Q96GM1 343 aa18.31■□□□□ 0.52
PNKP-220ENST00000627232 NUP50Q9UKX7 468 aa18.31■□□□□ 0.52
PNKP-220ENST00000627232 GAB2Q9UQC2 676 aa18.31■□□□□ 0.52
PNKP-220ENST00000627232 WSB1Q9Y6I7 421 aa18.31■□□□□ 0.52
PNKP-220ENST00000627232 TRGV10A0A0A0MS01 117 aa18.3■□□□□ 0.52
PNKP-220ENST00000627232 NKX6-3A6NJ46 265 aa18.3■□□□□ 0.52
PNKP-220ENST00000627232 TOR1AO14656 332 aa18.3■□□□□ 0.52
PNKP-220ENST00000627232 ATXN7O15265 892 aaPredicted RBP18.3■□□□□ 0.52
PNKP-220ENST00000627232 SYNGR2O43760 224 aa18.3■□□□□ 0.52
PNKP-220ENST00000627232 MED6O75586 246 aa18.3■□□□□ 0.52
PNKP-220ENST00000627232 P0C879 139 aa18.3■□□□□ 0.52
PNKP-220ENST00000627232 SWI5Q1ZZU3 235 aa18.3■□□□□ 0.52
PNKP-220ENST00000627232 Q3ZCU0 254 aa18.3■□□□□ 0.52
PNKP-220ENST00000627232 ODF3L1Q8IXM7 274 aa18.3■□□□□ 0.52
PNKP-220ENST00000627232 C1orf87Q8N0U7 546 aa18.3■□□□□ 0.52
PNKP-220ENST00000627232 SPAG16Q8N0X2 631 aa18.3■□□□□ 0.52
PNKP-220ENST00000627232 CD300LFQ8TDQ1 290 aa18.3■□□□□ 0.52
PNKP-220ENST00000627232 CORO2AQ92828 525 aa18.3■□□□□ 0.52
PNKP-220ENST00000627232 PARP11Q9NR21 331 aa18.3■□□□□ 0.52
PNKP-220ENST00000627232 PLA2G2EQ9NZK7 142 aa18.3■□□□□ 0.52
PNKP-220ENST00000627232 NDRG3Q9UGV2 375 aa18.3■□□□□ 0.52
PNKP-220ENST00000627232 PLCE1Q9P212 2302 aa18.3■□□□□ 0.52
PNKP-220ENST00000627232 SPENQ96T58 3664 aaKnown RBP18.3■□□□□ 0.52
PNKP-220ENST00000627232 CACNA1DQ01668 2161 aa18.3■□□□□ 0.52
PNKP-220ENST00000627232 TRAV38-1A0A0B4J264 116 aa18.29■□□□□ 0.52
PNKP-220ENST00000627232 KBTBD11-OT1A0A1B0GTJ5 212 aa18.29■□□□□ 0.52
PNKP-220ENST00000627232 C17orf98A8MV24 154 aa18.29■□□□□ 0.52
PNKP-220ENST00000627232 E7EQL1 145 aa18.29■□□□□ 0.52
PNKP-220ENST00000627232 NXPH3O95157 252 aa18.29■□□□□ 0.52
PNKP-220ENST00000627232 GYPAP02724 150 aa18.29■□□□□ 0.52
PNKP-220ENST00000627232 CD3EP07766 207 aa18.29■□□□□ 0.52
PNKP-220ENST00000627232 SELLP14151 372 aa18.29■□□□□ 0.52
PNKP-220ENST00000627232 GPR12P47775 334 aa18.29■□□□□ 0.52
PNKP-220ENST00000627232 TAS2R30P59541 319 aa18.29■□□□□ 0.52
PNKP-220ENST00000627232 IZUMO4Q1ZYL8 232 aa18.29■□□□□ 0.52
PNKP-220ENST00000627232 BTNL3Q6UXE8 466 aa18.29■□□□□ 0.52
PNKP-220ENST00000627232 DEFB108BQ8NET1 73 aa18.29■□□□□ 0.52
PNKP-220ENST00000627232 CCL13Q99616 98 aa18.29■□□□□ 0.52
PNKP-220ENST00000627232 SAP30LQ9HAJ7 183 aa18.29■□□□□ 0.52
PNKP-220ENST00000627232 CLN8Q9UBY8 286 aa18.29■□□□□ 0.52
PNKP-220ENST00000627232 ZNF729A6NN14 1252 aaPredicted RBP18.28■□□□□ 0.52
PNKP-220ENST00000627232 RAMP3O60896 148 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 RAB5CP51148 216 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 RAB7AP51149 207 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 BRWD1-AS2P59051 145 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 EFNB3Q15768 340 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 LTC4SQ16873 150 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 PXDC1Q5TGL8 231 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 ZNF295-AS1Q8N0V1 137 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 MS4A5Q9H3V2 200 aa18.28■□□□□ 0.52
PNKP-220ENST00000627232 LINC00574Q9H8X3 128 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms