RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ZP1P60852 638 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 GABRA6Q16445 453 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 COX19Q49B96 90 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 GTF2H5Q6ZYL4 71 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 OR52M1Q8NGK5 317 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 MS4A5Q9H3V2 200 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 AMMECR1Q9Y4X0 333 aaPredicted RBP12.09□□□□□ -0.47
CPSF1-212ENST00000616140 TNS1Q9HBL0 1735 aaKnown RBP12.09□□□□□ -0.47
CPSF1-212ENST00000616140 MED13LQ71F56 2210 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 DIDO1Q9BTC0 2240 aaKnown RBP12.08□□□□□ -0.48
CPSF1-212ENST00000616140 RSPO4Q2I0M5 234 aaPredicted RBP12.08□□□□□ -0.48
CPSF1-212ENST00000616140 ZNF383Q8NA42 475 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 APCDD1LQ8NCL9 501 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 OR5AU1Q8NGC0 362 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 DNASE2BQ8WZ79 361 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 POM121Q96HA1 1249 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 DLL3Q9NYJ7 618 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 SHANK1Q9Y566 2161 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 TEX50A0A1B0GTY4 177 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 M0R2Z0 102 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 SRSF10O75494 262 aaKnown RBP12.08□□□□□ -0.48
CPSF1-212ENST00000616140 FHITP49789 147 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 LDLRAD3Q86YD5 345 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 FGFRL1Q8N441 504 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 NPVFQ9HCQ7 196 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 CLEC5AQ9NY25 188 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 SLC2A8Q9NY64 477 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 SIPA1L1O43166 1804 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 M0R143 59 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 PGLYRP1O75594 196 aaPredicted RBP12.08□□□□□ -0.48
CPSF1-212ENST00000616140 TRGC2P03986 189 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 TGIF1Q15583 401 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 Q6ZN92 141 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 ZDHHC16Q969W1 377 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 RAB1BQ9H0U4 201 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 ARID2Q68CP9 1835 aa12.08□□□□□ -0.48
CPSF1-212ENST00000616140 LOC101059948A0A1B0GTJ6 334 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 NPIPB13A6NJU9 1138 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 TMEM229AB2RXF0 380 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 NPIPB4C9JG80 1138 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 P01737 135 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 WNT5AP41221 380 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 OR8I2Q8N0Y5 310 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 OR4C12Q96R67 309 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 C16orf97H3BN30 126 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 HPRT1P00492 218 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 MPV17P39210 176 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 RPS11P62280 158 aaKnown RBP eCLIP12.07□□□□□ -0.48
CPSF1-212ENST00000616140 ELOBQ15370 118 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 OR2D3Q8NGH3 330 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 OR1L1Q8NH94 360 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 GPR146Q96CH1 333 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 NDUFB4O95168 129 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 GOSR1O95249 250 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 OR1L6Q8NGR2 347 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 IGKV1D-43A0A0B4J1Z2 117 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 FAM90A10PA6NDY2 464 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 FAM90A18PA6NE21 464 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 FAM90A16PA6NEW6 464 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 FAM90A20PA6NIJ5 464 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 FAM90A8PA6NJQ4 464 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 FAM90A7PA6NKC0 464 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 FAM90A22PA8MWA6 464 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 FAM90A12PA8MX19 464 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 FAM90A5PA8MXJ8 464 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 FAM90A23PA8MXZ1 464 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 RAB29O14966 203 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 FAM90A15PP0C7V4 464 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 FAM90A13PP0C7W8 464 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 FAM90A14PP0C7W9 464 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 FAM90A24PP0C7X0 464 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 C16orf82Q7Z2V1 217 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 C1QL2Q7Z5L3 287 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 TAF15Q92804 592 aaKnown RBP eCLIP12.07□□□□□ -0.48
CPSF1-212ENST00000616140 VWCEQ96DN2 955 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 PAM16Q9Y3D7 125 aa12.07□□□□□ -0.48
CPSF1-212ENST00000616140 TTC28Q96AY4 2481 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 BDP1A6H8Y1 2624 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 SLC35B1P78383 322 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 PCOLCEQ15113 449 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 LAMTOR1Q6IAA8 161 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 DHRS11Q6UWP2 260 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 C5orf17Q8NAS9 161 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 ZNF596Q8TC21 504 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 TMUB1Q9BVT8 246 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 IGHV3-21A0A0B4J1V1 117 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 CEBPDP49716 269 aaPredicted RBP12.06□□□□□ -0.48
CPSF1-212ENST00000616140 CDCP2Q5VXM1 449 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 C10orf113Q5VZT2 155 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.06□□□□□ -0.489e-10■■■□□ 17.2
CPSF1-212ENST00000616140 STARD4Q96DR4 205 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 CCL13Q99616 98 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 SRXN1Q9BYN0 137 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 NAGKQ9UJ70 344 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 PXMP4Q9Y6I8 212 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 HSPB1P04792 205 aaKnown RBP12.06□□□□□ -0.48
CPSF1-212ENST00000616140 ZNF708P17019 499 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 C19orf35Q6ZS72 473 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 RASL11BQ9BPW5 248 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 WNT5BQ9H1J7 359 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms