RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 ABCA11PQ4W5N1 156 aa13.79□□□□□ -0.2
SHKBP1-212ENST00000596163 UBE2NLQ5JXB2 153 aa13.79□□□□□ -0.2
SHKBP1-212ENST00000596163 GPR107Q5VW38 600 aa13.79□□□□□ -0.2
SHKBP1-212ENST00000596163 ZNF833PQ6ZTB9 187 aa13.79□□□□□ -0.2
SHKBP1-212ENST00000596163 ODF3L1Q8IXM7 274 aa13.79□□□□□ -0.2
SHKBP1-212ENST00000596163 ACOT12Q8WYK0 555 aa13.79□□□□□ -0.2
SHKBP1-212ENST00000596163 SLC25A38Q96DW6 304 aa13.79□□□□□ -0.2
SHKBP1-212ENST00000596163 EAF1Q96JC9 268 aaPredicted RBP13.79□□□□□ -0.2
SHKBP1-212ENST00000596163 CABLES2Q9BTV7 478 aa13.79□□□□□ -0.2
SHKBP1-212ENST00000596163 ST6GALNAC5Q9BVH7 336 aa13.79□□□□□ -0.2
SHKBP1-212ENST00000596163 TOLLIPQ9H0E2 274 aa13.79□□□□□ -0.2
SHKBP1-212ENST00000596163 ABCG5Q9H222 651 aa13.79□□□□□ -0.2
SHKBP1-212ENST00000596163 IFI27L2Q9H2X8 130 aa13.79□□□□□ -0.2
SHKBP1-212ENST00000596163 RDH8Q9NYR8 311 aa13.79□□□□□ -0.2
SHKBP1-212ENST00000596163 ZNF230Q9UIE0 474 aaPredicted RBP13.79□□□□□ -0.2
SHKBP1-212ENST00000596163 ZNF221Q9UK13 617 aa13.79□□□□□ -0.2
SHKBP1-212ENST00000596163 TENM1Q9UKZ4 2725 aa13.79□□□□□ -0.2
SHKBP1-212ENST00000596163 SAA2-SAA4A0A096LPE2 208 aa13.78□□□□□ -0.2
SHKBP1-212ENST00000596163 TRBV6-7A0A0A0MS04 114 aa13.78□□□□□ -0.2
SHKBP1-212ENST00000596163 IGKV1-6A0A0C4DH72 117 aa13.78□□□□□ -0.2
SHKBP1-212ENST00000596163 TMEM235A6NFC5 223 aa13.78□□□□□ -0.2
SHKBP1-212ENST00000596163 NCBP2LA6PVI3 153 aaKnown RBP13.78□□□□□ -0.2
SHKBP1-212ENST00000596163 GABARAPO95166 117 aa13.78□□□□□ -0.2
SHKBP1-212ENST00000596163 TFAP2AP05549 437 aa13.78□□□□□ -0.2
SHKBP1-212ENST00000596163 SAA2P0DJI9 122 aaPredicted RBP13.78□□□□□ -0.2
SHKBP1-212ENST00000596163 VSIG10L2P0DP72 767 aa13.78□□□□□ -0.2
SHKBP1-212ENST00000596163 RORCP51449 518 aa13.78□□□□□ -0.2
SHKBP1-212ENST00000596163 KLHDC1Q8N7A1 406 aa13.78□□□□□ -0.2
SHKBP1-212ENST00000596163 CMTM3Q96MX0 182 aa13.78□□□□□ -0.2
SHKBP1-212ENST00000596163 GINS4Q9BRT9 223 aa13.78□□□□□ -0.2
SHKBP1-212ENST00000596163 SERTAD4Q9NUC0 356 aa13.78□□□□□ -0.2
SHKBP1-212ENST00000596163 M0QZ24 198 aa13.77□□□□□ -0.21
SHKBP1-212ENST00000596163 XRCC3O43542 346 aa13.77□□□□□ -0.21
SHKBP1-212ENST00000596163 GPR12P47775 334 aa13.77□□□□□ -0.21
SHKBP1-212ENST00000596163 OR3A3P47888 321 aa13.77□□□□□ -0.21
SHKBP1-212ENST00000596163 SRSF4Q08170 494 aaKnown RBP13.77□□□□□ -0.21
SHKBP1-212ENST00000596163 LSAMPQ13449 338 aa13.77□□□□□ -0.21
SHKBP1-212ENST00000596163 IGSF11Q5DX21 431 aa13.77□□□□□ -0.21
SHKBP1-212ENST00000596163 C9orf152Q5JTZ5 239 aa13.77□□□□□ -0.21
SHKBP1-212ENST00000596163 SAMD12Q8N8I0 201 aa13.77□□□□□ -0.21
SHKBP1-212ENST00000596163 NUDCD2Q8WVJ2 157 aa13.77□□□□□ -0.21
SHKBP1-212ENST00000596163 MAFIPQ8WZ33 124 aa13.77□□□□□ -0.21
SHKBP1-212ENST00000596163 AP3S1Q92572 193 aa13.77□□□□□ -0.21
SHKBP1-212ENST00000596163 NABP2Q9BQ15 211 aa13.77□□□□□ -0.21
SHKBP1-212ENST00000596163 AGMATQ9BSE5 352 aa13.77□□□□□ -0.21
SHKBP1-212ENST00000596163 ELF5Q9UKW6 265 aaPredicted RBP13.77□□□□□ -0.21
SHKBP1-212ENST00000596163 MC5RP33032 325 aa13.76□□□□□ -0.21
SHKBP1-212ENST00000596163 CBX5P45973 191 aa13.76□□□□□ -0.21
SHKBP1-212ENST00000596163 KRTAP10-3P60369 221 aa13.76□□□□□ -0.21
SHKBP1-212ENST00000596163 CTF1Q16619 201 aa13.76□□□□□ -0.21
SHKBP1-212ENST00000596163 FBLN7Q53RD9 439 aa13.76□□□□□ -0.21
SHKBP1-212ENST00000596163 MZT2AQ6P582 158 aa13.76□□□□□ -0.21
SHKBP1-212ENST00000596163 Q8N6K4 173 aa13.76□□□□□ -0.21
SHKBP1-212ENST00000596163 C5orf56Q8N8D9 126 aa13.76□□□□□ -0.21
SHKBP1-212ENST00000596163 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.76□□□□□ -0.21
SHKBP1-212ENST00000596163 ABHD14BQ96IU4 210 aa13.76□□□□□ -0.21
SHKBP1-212ENST00000596163 RASL11BQ9BPW5 248 aa13.76□□□□□ -0.21
SHKBP1-212ENST00000596163 MRPL20Q9BYC9 149 aaKnown RBP13.76□□□□□ -0.21
SHKBP1-212ENST00000596163 PARP12Q9H0J9 701 aaKnown RBP13.76□□□□□ -0.21
SHKBP1-212ENST00000596163 AUNIPQ9H7T9 357 aa13.76□□□□□ -0.21
SHKBP1-212ENST00000596163 RNF150Q9ULK6 438 aa13.76□□□□□ -0.21
SHKBP1-212ENST00000596163 RBM7Q9Y580 266 aaKnown RBP13.76□□□□□ -0.21
SHKBP1-212ENST00000596163 SMIM31A0A1B0GVY4 71 aa13.75□□□□□ -0.21
SHKBP1-212ENST00000596163 ZNF736B4DX44 427 aaPredicted RBP13.75□□□□□ -0.21
SHKBP1-212ENST00000596163 AMY1AP04745 511 aa13.75□□□□□ -0.21
SHKBP1-212ENST00000596163 AMY2AP04746 511 aa13.75□□□□□ -0.21
SHKBP1-212ENST00000596163 RPL5P46777 297 aaKnown RBP13.75□□□□□ -0.21
SHKBP1-212ENST00000596163 CNIH2Q6PI25 160 aa13.75□□□□□ -0.21
SHKBP1-212ENST00000596163 Q6ZS46 218 aa13.75□□□□□ -0.21
SHKBP1-212ENST00000596163 CENPVQ7Z7K6 275 aaPredicted RBP13.75□□□□□ -0.21
SHKBP1-212ENST00000596163 ZNF251Q9BRH9 671 aa13.75□□□□□ -0.21
SHKBP1-212ENST00000596163 WNT10AQ9GZT5 417 aa13.75□□□□□ -0.21
SHKBP1-212ENST00000596163 NAA50Q9GZZ1 169 aaKnown RBP13.75□□□□□ -0.21
SHKBP1-212ENST00000596163 LIN7CQ9NUP9 197 aaKnown RBP13.75□□□□□ -0.21
SHKBP1-212ENST00000596163 COMMD3Q9UBI1 195 aa13.75□□□□□ -0.21
SHKBP1-212ENST00000596163 GAB2Q9UQC2 676 aa13.75□□□□□ -0.21
SHKBP1-212ENST00000596163 OR5H14A6NHG9 310 aa13.74□□□□□ -0.21
SHKBP1-212ENST00000596163 SSX5O60225 188 aa13.74□□□□□ -0.21
SHKBP1-212ENST00000596163 OR8U9P0C7N5 309 aa13.74□□□□□ -0.21
SHKBP1-212ENST00000596163 ZNF182P17025 639 aaPredicted RBP13.74□□□□□ -0.21
SHKBP1-212ENST00000596163 RPL39P5Q59GN2 51 aa13.74□□□□□ -0.21
SHKBP1-212ENST00000596163 TMEM69Q5SWH9 247 aa13.74□□□□□ -0.21
SHKBP1-212ENST00000596163 OR8U1Q8NH10 309 aa13.74□□□□□ -0.21
SHKBP1-212ENST00000596163 BCL7BQ9BQE9 202 aa13.74□□□□□ -0.21
SHKBP1-212ENST00000596163 ANXA10Q9UJ72 324 aa13.74□□□□□ -0.21
SHKBP1-212ENST00000596163 IGKV1D-8A0A087WSZ0 117 aa13.73□□□□□ -0.21
SHKBP1-212ENST00000596163 NOL3O60936 208 aaKnown RBP13.73□□□□□ -0.21
SHKBP1-212ENST00000596163 FBXO24O75426 580 aa13.73□□□□□ -0.21
SHKBP1-212ENST00000596163 RBBP9O75884 186 aa13.73□□□□□ -0.21
SHKBP1-212ENST00000596163 APOA1P02647 267 aa13.73□□□□□ -0.21
SHKBP1-212ENST00000596163 CT45A6P0DMU7 189 aa13.73□□□□□ -0.21
SHKBP1-212ENST00000596163 CT45A5P0DMU8 189 aa13.73□□□□□ -0.21
SHKBP1-212ENST00000596163 CT45A7P0DMV0 189 aa13.73□□□□□ -0.21
SHKBP1-212ENST00000596163 SOX6P35712 828 aa13.73□□□□□ -0.21
SHKBP1-212ENST00000596163 ARPC4P59998 168 aa13.73□□□□□ -0.21
SHKBP1-212ENST00000596163 PRR31Q5SQ13 230 aa13.73□□□□□ -0.21
SHKBP1-212ENST00000596163 HOGA1Q86XE5 327 aa13.73□□□□□ -0.21
SHKBP1-212ENST00000596163 CLVS1Q8IUQ0 354 aaPredicted RBP13.73□□□□□ -0.21
SHKBP1-212ENST00000596163 H1FOOQ8IZA3 346 aaPredicted RBP13.73□□□□□ -0.21
SHKBP1-212ENST00000596163 RAB2BQ8WUD1 216 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms