RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 LYRM2Q9NU23 88 aaPredicted RBP9.41□□□□□ -0.9
LIG3-204ENST00000585740 TAS2R3Q9NYW6 316 aa9.41□□□□□ -0.9
LIG3-204ENST00000585740 NUP50Q9UKX7 468 aa9.41□□□□□ -0.9
LIG3-204ENST00000585740 LAMP3Q9UQV4 416 aa9.41□□□□□ -0.9
LIG3-204ENST00000585740 DYSFO75923 2080 aa9.41□□□□□ -0.9
LIG3-204ENST00000585740 TANC2Q9HCD6 1990 aa9.41□□□□□ -0.9
LIG3-204ENST00000585740 ARID1AO14497 2285 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 TRGV8A0A0C4DH27 118 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 LRRC30A6NM36 301 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 C15orf65H3BRN8 121 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 YPEL1O60688 119 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 THBDP07204 575 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 SEC11BP0C7V7 166 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 ZNF16P17020 682 aaPredicted RBP9.4□□□□□ -0.9
LIG3-204ENST00000585740 CA7P43166 264 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 AKR1C2P52895 323 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 POLR2GP62487 172 aaKnown RBP eCLIP9.4□□□□□ -0.9
LIG3-204ENST00000585740 RPL23AP62750 156 aaKnown RBP9.4□□□□□ -0.9
LIG3-204ENST00000585740 EWSR1Q01844 656 aaKnown RBP eCLIP9.4□□□□□ -0.9
LIG3-204ENST00000585740 EDDM3AQ14507 147 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 ZNF266Q14584 549 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 FAM209AQ5JX71 171 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 STUMQ69YW2 141 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 IL34Q6ZMJ4 242 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 C1orf87Q8N0U7 546 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 UBALD1Q8TB05 177 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 LRRC46Q96FV0 321 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 YPEL2Q96QA6 119 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 HSD17B10Q99714 261 aaKnown RBP9.4□□□□□ -0.9
LIG3-204ENST00000585740 ESRP2Q9H6T0 727 aaKnown RBP9.4□□□□□ -0.9
LIG3-204ENST00000585740 ZNF665Q9H7R5 613 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 GCM1Q9NP62 436 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 COA4Q9NYJ1 87 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 LPAR3Q9UBY5 353 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 FLNCQ14315 2725 aa9.4□□□□□ -0.9
LIG3-204ENST00000585740 CACNA1DQ01668 2161 aa9.4□□□□□ -0.91
LIG3-204ENST00000585740 NOTCH2Q04721 2471 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 RP1L1Q8IWN7 2480 aaPredicted RBP9.39□□□□□ -0.91
LIG3-204ENST00000585740 IGHV3OR15-7A0A075B7D8 119 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 NKX6-3A6NJ46 265 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 C17orf100A8MU93 164 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 ZNF705EA8MWA4 302 aaPredicted RBP9.39□□□□□ -0.91
LIG3-204ENST00000585740 F2RL2O00254 374 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 SSSCA1O60232 199 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 MED6O75586 246 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 OR4A8P0C604 315 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 FAM157CP0CG43 387 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 SFTPCP11686 197 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 CD80P33681 288 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 RAB5CP51148 216 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 TLE1Q04724 770 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 BSPH1Q075Z2 132 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 EIF4EBP1Q13541 118 aaPredicted RBP9.39□□□□□ -0.91
LIG3-204ENST00000585740 ADIPOQQ15848 244 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 FBXL19-AS1Q494R0 122 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 ZNF585BQ52M93 769 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 C4orf17Q53FE4 359 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 TEX36Q5VZQ5 186 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 C22orf34Q6ZV56 151 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 CD300LFQ8TDQ1 290 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 SMIM8Q96KF7 97 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 GPHA2Q96T91 129 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 SMIM3Q9BZL3 60 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 MMP26Q9NRE1 261 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 GAB2Q9UQC2 676 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 MMP24Q9Y5R2 645 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 DSCAML1Q8TD84 2053 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 PLCE1Q9P212 2302 aa9.39□□□□□ -0.91
LIG3-204ENST00000585740 RELNP78509 3460 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 TRAV38-1A0A0B4J264 116 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 FAM24AA6NFZ4 105 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 CLDN1O95832 211 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 IGKV1-39P01597 117 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 IGKV1D-39P04432 117 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 EPHA1P21709 976 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 SSTR5P35346 364 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 PPP1CCP36873 323 aaKnown RBP9.38□□□□□ -0.91
LIG3-204ENST00000585740 LPAR6P43657 344 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 RAB7AP51149 207 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 CAV2P51636 162 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 TAS2R30P59541 319 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 SWI5Q1ZZU3 235 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 CXorf66Q5JRM2 361 aaPredicted RBP9.38□□□□□ -0.91
LIG3-204ENST00000585740 NCMAPQ5T1S8 102 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 STX12Q86Y82 276 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 TMEM252Q8N6L7 170 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 OR1S2Q8NGQ3 325 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 RNASE6Q93091 150 aaKnown RBP9.38□□□□□ -0.91
LIG3-204ENST00000585740 PARP12Q9H0J9 701 aaKnown RBP9.38□□□□□ -0.91
LIG3-204ENST00000585740 PARP11Q9NR21 331 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 CALYQ9NYX4 217 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 GNG12Q9UBI6 72 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 CACNG5Q9UF02 275 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 STRAPQ9Y3F4 350 aaKnown RBP9.38□□□□□ -0.91
LIG3-204ENST00000585740 WSB1Q9Y6I7 421 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 LRRK2Q5S007 2527 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 SPTAN1Q13813 2472 aaKnown RBP9.38□□□□□ -0.91
LIG3-204ENST00000585740 DSCAMO60469 2012 aa9.38□□□□□ -0.91
LIG3-204ENST00000585740 BSNQ9UPA5 3926 aa9.37□□□□□ -0.91
LIG3-204ENST00000585740 RAI1Q7Z5J4 1906 aaPredicted RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms