RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 LINC00527Q9UJ94 153 aa18.89■□□□□ 0.61
SHMT1-206ENST00000579558 A0A075B6Q4 140 aa18.88■□□□□ 0.61
SHMT1-206ENST00000579558 TRDCB7Z8K6 153 aa18.88■□□□□ 0.61
SHMT1-206ENST00000579558 RAB27BO00194 218 aa18.88■□□□□ 0.61
SHMT1-206ENST00000579558 RAB29O14966 203 aa18.88■□□□□ 0.61
SHMT1-206ENST00000579558 GNB3P16520 340 aa18.88■□□□□ 0.61
SHMT1-206ENST00000579558 GPR12P47775 334 aa18.88■□□□□ 0.61
SHMT1-206ENST00000579558 FAM71F2Q6NXP2 309 aa18.88■□□□□ 0.61
SHMT1-206ENST00000579558 EDARADDQ8WWZ3 215 aa18.88■□□□□ 0.61
SHMT1-206ENST00000579558 CHCHD6Q9BRQ6 235 aa18.88■□□□□ 0.61
SHMT1-206ENST00000579558 LINC01548A6NM66 108 aa18.87■□□□□ 0.61
SHMT1-206ENST00000579558 MFNGO00587 321 aa18.87■□□□□ 0.61
SHMT1-206ENST00000579558 ITGB1BP1O14713 200 aa18.87■□□□□ 0.61
SHMT1-206ENST00000579558 PF4V1P10720 104 aa18.87■□□□□ 0.61
SHMT1-206ENST00000579558 HIST1H1DP16402 221 aaKnown RBP18.87■□□□□ 0.61
SHMT1-206ENST00000579558 MMDQ15546 238 aa18.87■□□□□ 0.61
SHMT1-206ENST00000579558 RPL39P5Q59GN2 51 aa18.87■□□□□ 0.61
SHMT1-206ENST00000579558 STPG2Q8N412 459 aa18.87■□□□□ 0.61
SHMT1-206ENST00000579558 FAM71E2Q8N5Q1 922 aa18.87■□□□□ 0.61
SHMT1-206ENST00000579558 ABHD14BQ96IU4 210 aa18.87■□□□□ 0.61
SHMT1-206ENST00000579558 KCTD7Q96MP8 289 aa18.87■□□□□ 0.61
SHMT1-206ENST00000579558 ATG5Q9H1Y0 275 aa18.87■□□□□ 0.61
SHMT1-206ENST00000579558 NOTCH1P46531 2555 aa18.87■□□□□ 0.61
SHMT1-206ENST00000579558 LOC100506127A0A0U1RQW1 187 aa18.86■□□□□ 0.61
SHMT1-206ENST00000579558 AP4M1O00189 453 aa18.86■□□□□ 0.61
SHMT1-206ENST00000579558 FCGR3AP08637 254 aa18.86■□□□□ 0.61
SHMT1-206ENST00000579558 CD36P16671 472 aa18.86■□□□□ 0.61
SHMT1-206ENST00000579558 SLC35B1P78383 322 aa18.86■□□□□ 0.61
SHMT1-206ENST00000579558 ZNF251Q9BRH9 671 aa18.86■□□□□ 0.61
SHMT1-206ENST00000579558 C11orf54Q9H0W9 315 aaPredicted RBP18.86■□□□□ 0.61
SHMT1-206ENST00000579558 DAPK2Q9UIK4 370 aa18.86■□□□□ 0.61
SHMT1-206ENST00000579558 PLXNB1O43157 2135 aa18.86■□□□□ 0.61
SHMT1-206ENST00000579558 IGKV1-6A0A0C4DH72 117 aa18.85■□□□□ 0.61
SHMT1-206ENST00000579558 SDC2P34741 201 aa18.85■□□□□ 0.61
SHMT1-206ENST00000579558 ACTBP60709 375 aa18.85■□□□□ 0.61
SHMT1-206ENST00000579558 OR4A4PQ8NGN8 299 aa18.85■□□□□ 0.61
SHMT1-206ENST00000579558 AGMATQ9BSE5 352 aa18.85■□□□□ 0.61
SHMT1-206ENST00000579558 GHITMQ9H3K2 345 aa18.85■□□□□ 0.61
SHMT1-206ENST00000579558 G3V4G9 280 aa18.84■□□□□ 0.61
SHMT1-206ENST00000579558 FABP7O15540 132 aa18.84■□□□□ 0.61
SHMT1-206ENST00000579558 SOX6P35712 828 aa18.84■□□□□ 0.61
SHMT1-206ENST00000579558 MXD1Q05195 221 aa18.84■□□□□ 0.61
SHMT1-206ENST00000579558 ARFRP1Q13795 201 aa18.84■□□□□ 0.61
SHMT1-206ENST00000579558 KIR2DS1Q14954 304 aa18.84■□□□□ 0.61
SHMT1-206ENST00000579558 SFXN4Q6P4A7 337 aa18.84■□□□□ 0.61
SHMT1-206ENST00000579558 FAM131AQ6UXB0 335 aa18.84■□□□□ 0.61
SHMT1-206ENST00000579558 PHF21AQ96BD5 680 aa18.84■□□□□ 0.61
SHMT1-206ENST00000579558 HSPB9Q9BQS6 159 aa18.84■□□□□ 0.61
SHMT1-206ENST00000579558 RNF167Q9H6Y7 350 aa18.84■□□□□ 0.61
SHMT1-206ENST00000579558 SNRPBP14678 240 aaKnown RBP18.83■□□□□ 0.6
SHMT1-206ENST00000579558 TALDO1P37837 337 aa18.83■□□□□ 0.6
SHMT1-206ENST00000579558 SERPINB10P48595 397 aa18.83■□□□□ 0.6
SHMT1-206ENST00000579558 ARL6IP1Q15041 203 aa18.83■□□□□ 0.6
SHMT1-206ENST00000579558 COMMD1Q8N668 190 aa18.83■□□□□ 0.6
SHMT1-206ENST00000579558 MAFIPQ8WZ33 124 aa18.83■□□□□ 0.6
SHMT1-206ENST00000579558 RITA1Q96K30 269 aa18.83■□□□□ 0.6
SHMT1-206ENST00000579558 RDH8Q9NYR8 311 aa18.83■□□□□ 0.6
SHMT1-206ENST00000579558 RNF150Q9ULK6 438 aa18.83■□□□□ 0.6
SHMT1-206ENST00000579558 BET1O15155 118 aa18.82■□□□□ 0.6
SHMT1-206ENST00000579558 NBR2O15453 112 aa18.82■□□□□ 0.6
SHMT1-206ENST00000579558 RRP9O43818 475 aaKnown RBP18.82■□□□□ 0.6
SHMT1-206ENST00000579558 PF4P02776 101 aa18.82■□□□□ 0.6
SHMT1-206ENST00000579558 CLEC2LP0C7M8 214 aa18.82■□□□□ 0.6
SHMT1-206ENST00000579558 CT45A6P0DMU7 189 aa18.82■□□□□ 0.6
SHMT1-206ENST00000579558 CT45A5P0DMU8 189 aa18.82■□□□□ 0.6
SHMT1-206ENST00000579558 CT45A7P0DMV0 189 aa18.82■□□□□ 0.6
SHMT1-206ENST00000579558 CNTFRP26992 372 aa18.82■□□□□ 0.6
SHMT1-206ENST00000579558 GLDNQ6ZMI3 551 aaPredicted RBP18.82■□□□□ 0.6
SHMT1-206ENST00000579558 LGALS14Q8TCE9 139 aa18.82■□□□□ 0.6
SHMT1-206ENST00000579558 CABLES2Q9BTV7 478 aa18.82■□□□□ 0.6
SHMT1-206ENST00000579558 GON7Q9BXV9 100 aa18.82■□□□□ 0.6
SHMT1-206ENST00000579558 ZNF230Q9UIE0 474 aaPredicted RBP18.82■□□□□ 0.6
SHMT1-206ENST00000579558 ZNF107Q9UII5 783 aaPredicted RBP18.82■□□□□ 0.6
SHMT1-206ENST00000579558 ZNF221Q9UK13 617 aa18.82■□□□□ 0.6
SHMT1-206ENST00000579558 OR5H14A6NHG9 310 aa18.81■□□□□ 0.6
SHMT1-206ENST00000579558 GSTT2P0CG29 244 aa18.81■□□□□ 0.6
SHMT1-206ENST00000579558 GSTT2BP0CG30 244 aa18.81■□□□□ 0.6
SHMT1-206ENST00000579558 RPL23AP62750 156 aaKnown RBP18.81■□□□□ 0.6
SHMT1-206ENST00000579558 PDLIM3Q53GG5 364 aaPredicted RBP18.81■□□□□ 0.6
SHMT1-206ENST00000579558 IGSF11Q5DX21 431 aa18.81■□□□□ 0.6
SHMT1-206ENST00000579558 SAMD5Q5TGI4 173 aa18.81■□□□□ 0.6
SHMT1-206ENST00000579558 CENPOQ9BU64 300 aa18.81■□□□□ 0.6
SHMT1-206ENST00000579558 ELF5Q9UKW6 265 aaPredicted RBP18.81■□□□□ 0.6
SHMT1-206ENST00000579558 A0A087WXM4 84 aa18.8■□□□□ 0.6
SHMT1-206ENST00000579558 H0YJW9 148 aa18.8■□□□□ 0.6
SHMT1-206ENST00000579558 TNFAIP8O95379 198 aa18.8■□□□□ 0.6
SHMT1-206ENST00000579558 CD33P20138 364 aa18.8■□□□□ 0.6
SHMT1-206ENST00000579558 MC5RP33032 325 aa18.8■□□□□ 0.6
SHMT1-206ENST00000579558 CDNFQ49AH0 187 aa18.8■□□□□ 0.6
SHMT1-206ENST00000579558 TEX38Q6PEX7 206 aa18.8■□□□□ 0.6
SHMT1-206ENST00000579558 TSPAN14Q8NG11 270 aa18.8■□□□□ 0.6
SHMT1-206ENST00000579558 OR10J5Q8NHC4 309 aa18.8■□□□□ 0.6
SHMT1-206ENST00000579558 VCX3AQ9NNX9 186 aa18.8■□□□□ 0.6
SHMT1-206ENST00000579558 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP18.8■□□□□ 0.6
SHMT1-206ENST00000579558 KIAA1456Q9P272 454 aa18.8■□□□□ 0.6
SHMT1-206ENST00000579558 H7C2Y5 167 aa18.79■□□□□ 0.6
SHMT1-206ENST00000579558 SCGNO76038 276 aa18.79■□□□□ 0.6
SHMT1-206ENST00000579558 PNLIPRP3Q17RR3 467 aa18.79■□□□□ 0.6
SHMT1-206ENST00000579558 C5orf64Q2M2E5 130 aa18.79■□□□□ 0.6
SHMT1-206ENST00000579558 BEAN1Q3B7T3 259 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms