RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 KLF9Q13886 244 aaPredicted RBP8.53□□□□□ -1.04
SMG6-213ENST00000573166 OR4D10Q8NGI6 311 aa8.53□□□□□ -1.04
SMG6-213ENST00000573166 C2orf50Q96LR7 162 aa8.53□□□□□ -1.04
SMG6-213ENST00000573166 NRIP2Q9BQI9 281 aa8.53□□□□□ -1.04
SMG6-213ENST00000573166 GCM1Q9NP62 436 aa8.53□□□□□ -1.04
SMG6-213ENST00000573166 IDI2-AS1Q9NZ38 188 aa8.53□□□□□ -1.04
SMG6-213ENST00000573166 C1RLQ9NZP8 487 aa8.53□□□□□ -1.04
SMG6-213ENST00000573166 PRRC2CQ9Y520 2896 aaKnown RBP8.53□□□□□ -1.04
SMG6-213ENST00000573166 A0A0B4J2A0 478 aa8.53□□□□□ -1.04
SMG6-213ENST00000573166 ZNF729A6NN14 1252 aaPredicted RBP8.53□□□□□ -1.04
SMG6-213ENST00000573166 PTBP3O95758 552 aaKnown RBP8.53□□□□□ -1.04
SMG6-213ENST00000573166 TFF1P04155 84 aa8.53□□□□□ -1.04
SMG6-213ENST00000573166 PEA15Q15121 130 aa8.53□□□□□ -1.04
SMG6-213ENST00000573166 SLC35E4Q6ICL7 350 aa8.53□□□□□ -1.04
SMG6-213ENST00000573166 SEM1Q6ZVN7 128 aa8.53□□□□□ -1.04
SMG6-213ENST00000573166 SCARB1Q8WTV0 552 aa8.53□□□□□ -1.04
SMG6-213ENST00000573166 LINC00052Q96N35 136 aa8.53□□□□□ -1.04
SMG6-213ENST00000573166 HSD17B10Q99714 261 aaKnown RBP8.53□□□□□ -1.04
SMG6-213ENST00000573166 PLEKHA3Q9HB20 300 aa8.53□□□□□ -1.04
SMG6-213ENST00000573166 Q9N2K0 584 aa8.53□□□□□ -1.04
SMG6-213ENST00000573166 SHPKQ9UHJ6 478 aa8.53□□□□□ -1.04
SMG6-213ENST00000573166 TMED3Q9Y3Q3 217 aa8.53□□□□□ -1.04
SMG6-213ENST00000573166 MED12LQ86YW9 2145 aa8.52□□□□□ -1.04
SMG6-213ENST00000573166 COL5A1P20908 1838 aaPredicted RBP8.52□□□□□ -1.04
SMG6-213ENST00000573166 HIVEP3Q5T1R4 2406 aa8.52□□□□□ -1.04
SMG6-213ENST00000573166 IGHV3-72A0A0B4J1Y9 119 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 A6NNC1 897 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 GIPP09681 153 aaPredicted RBP8.52□□□□□ -1.05
SMG6-213ENST00000573166 KIR2DS2P43631 304 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 BAXQ07812 192 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 FAM90A1Q86YD7 464 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 ABHD12Q8N2K0 398 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 UBAC2Q8NBM4 344 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 HARBI1Q96MB7 349 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 CIB3Q96Q77 187 aaPredicted RBP8.52□□□□□ -1.05
SMG6-213ENST00000573166 TCEAL7Q9BRU2 100 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 TRIOO75962 3097 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 A0A1W2PPV4 95 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 C9orf170A2RU37 121 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 OR5H14A6NHG9 310 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 MPC2O95563 127 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 PLAC9Q5JTB6 97 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 COLCA1Q6ZS62 124 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 FLYWCH2Q96CP2 140 aaKnown RBP8.52□□□□□ -1.05
SMG6-213ENST00000573166 DCTN5Q9BTE1 182 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 TM2D1Q9BX74 207 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 GHITMQ9H3K2 345 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.52□□□□□ -1.05
SMG6-213ENST00000573166 IGHV3OR16-10A0A075B7F0 116 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 HTR1DP28221 377 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 TMEM50BP56557 158 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 MMDQ15546 238 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 MYPOPQ86VE0 399 aaPredicted RBP8.52□□□□□ -1.05
SMG6-213ENST00000573166 HSD17B11Q8NBQ5 300 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 VSTM2AQ8TAG5 236 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 SLC35E1Q96K37 410 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 TMEM56Q96MV1 263 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 DMRTA2Q96SC8 542 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 CACNG5Q9UF02 275 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 CACFD1Q9UGQ2 172 aa8.52□□□□□ -1.05
SMG6-213ENST00000573166 IGKV1-12A0A0C4DH73 117 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 SRRM5B3KS81 715 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 DUS4LO95620 317 aaKnown RBP8.51□□□□□ -1.05
SMG6-213ENST00000573166 CGAP01215 116 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 IGKV1D-12P01611 117 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 GAPDHP04406 335 aaKnown RBP8.51□□□□□ -1.05
SMG6-213ENST00000573166 THBS3P49746 956 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 SCGB2A2Q13296 93 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 VAX1Q5SQQ9 334 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 PNKDQ8N490 385 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 ZBTB34Q8NCN2 500 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 STRAPQ9Y3F4 350 aaKnown RBP8.51□□□□□ -1.05
SMG6-213ENST00000573166 RAG2P55895 527 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 TMEM88Q6PEY1 159 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 RNF141Q8WVD5 230 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 PPP1R1CQ8WVI7 109 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 R3HDM4Q96D70 268 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 GNB4Q9HAV0 340 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 PRR13Q9NZ81 148 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 CLEC18AA5D8T8 446 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 MLNRO43193 412 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 F2RP25116 425 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 ADORA2A-AS1P86434 159 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 SSX2Q16385 188 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 CLEC18CQ8NCF0 446 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 OR10P1Q8NGE3 313 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 OR1S2Q8NGQ3 325 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 OR9G1Q8NH87 305 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 OR1A1Q9P1Q5 309 aa8.51□□□□□ -1.05
SMG6-213ENST00000573166 TNRC6AQ8NDV7 1962 aaKnown RBP8.51□□□□□ -1.05
SMG6-213ENST00000573166 ZNF462Q96JM2 2506 aa8.5□□□□□ -1.05
SMG6-213ENST00000573166 IGKV1-27A0A075B6S5 117 aa8.5□□□□□ -1.05
SMG6-213ENST00000573166 C12orf77C9JDV5 145 aa8.5□□□□□ -1.05
SMG6-213ENST00000573166 KCNAB3O43448 404 aa8.5□□□□□ -1.05
SMG6-213ENST00000573166 ADAP1O75689 374 aa8.5□□□□□ -1.05
SMG6-213ENST00000573166 IGLV1-44P01699 117 aa8.5□□□□□ -1.05
SMG6-213ENST00000573166 TNXAQ16473 311 aa8.5□□□□□ -1.05
SMG6-213ENST00000573166 CLEC18BQ6UXF7 455 aa8.5□□□□□ -1.05
SMG6-213ENST00000573166 CLEC7AQ9BXN2 247 aa8.5□□□□□ -1.05
SMG6-213ENST00000573166 TRBV23-1A0A0A0MS06 115 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms