RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 NPFFR1Q9GZQ6 430 aa12.65□□□□□ -0.38
CHD3-215ENST00000572750 RDH8Q9NYR8 311 aa12.65□□□□□ -0.38
CHD3-215ENST00000572750 H3BMQ9 156 aa12.64□□□□□ -0.39
CHD3-215ENST00000572750 XRCC3O43542 346 aa12.64□□□□□ -0.39
CHD3-215ENST00000572750 IGKV1D-33P01593 117 aa12.64□□□□□ -0.39
CHD3-215ENST00000572750 IGKV1-33P01594 117 aa12.64□□□□□ -0.39
CHD3-215ENST00000572750 FCER2P06734 321 aa12.64□□□□□ -0.39
CHD3-215ENST00000572750 ZNF182P17025 639 aaPredicted RBP12.64□□□□□ -0.39
CHD3-215ENST00000572750 TAS2R20P59543 309 aa12.64□□□□□ -0.39
CHD3-215ENST00000572750 HABP2Q14520 560 aaPredicted RBP12.64□□□□□ -0.39
CHD3-215ENST00000572750 SRSF7Q16629 238 aaKnown RBP eCLIP12.64□□□□□ -0.39
CHD3-215ENST00000572750 Q6ZS49 121 aa12.64□□□□□ -0.39
CHD3-215ENST00000572750 LINC01006Q8NI28 216 aa12.64□□□□□ -0.39
CHD3-215ENST00000572750 ABHD14BQ96IU4 210 aa12.64□□□□□ -0.39
CHD3-215ENST00000572750 BCL7BQ9BQE9 202 aa12.64□□□□□ -0.39
CHD3-215ENST00000572750 MRPL20Q9BYC9 149 aaKnown RBP12.64□□□□□ -0.39
CHD3-215ENST00000572750 C11orf54Q9H0W9 315 aaPredicted RBP12.64□□□□□ -0.39
CHD3-215ENST00000572750 BEX1Q9HBH7 125 aa12.64□□□□□ -0.39
CHD3-215ENST00000572750 SIGLEC9Q9Y336 463 aa12.64□□□□□ -0.39
CHD3-215ENST00000572750 TRBV6-7A0A0A0MS04 114 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 CLPSL1A2RUU4 121 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 MEIS3P1A6NDR6 274 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 FAM90A9PA6NNJ1 464 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 ZNF736B4DX44 427 aaPredicted RBP12.63□□□□□ -0.39
CHD3-215ENST00000572750 TXNL1O43396 289 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 LANCL1O43813 399 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 TSPAN9O75954 239 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 OR2F2O95006 317 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 APOA1P02647 267 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 LPLP06858 475 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 FAM106CPP0CH98 169 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 ELK1P19419 428 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 DEFA6Q01524 100 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 HNF4GQ14541 408 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 RPL39P5Q59GN2 51 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 ZNF833PQ6ZTB9 187 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 GVQW1Q8N7I0 195 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 C3orf56Q8N813 242 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 OR10J5Q8NHC4 309 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 EDARADDQ8WWZ3 215 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 RANBP3Q9H6Z4 567 aaPredicted RBP12.63□□□□□ -0.39
CHD3-215ENST00000572750 ZNF702PQ9H963 129 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 CEPT1Q9Y6K0 416 aa12.63□□□□□ -0.39
CHD3-215ENST00000572750 ITGB1BP1O14713 200 aa12.62□□□□□ -0.39
CHD3-215ENST00000572750 TMEM11P17152 192 aa12.62□□□□□ -0.39
CHD3-215ENST00000572750 SOX6P35712 828 aa12.62□□□□□ -0.39
CHD3-215ENST00000572750 MZT2AQ6P582 158 aa12.62□□□□□ -0.39
CHD3-215ENST00000572750 DYNC2LI1Q8TCX1 351 aa12.62□□□□□ -0.39
CHD3-215ENST00000572750 WFDC12Q8WWY7 111 aa12.62□□□□□ -0.39
CHD3-215ENST00000572750 RBM14Q96PK6 669 aaKnown RBP12.62□□□□□ -0.39
CHD3-215ENST00000572750 GINS4Q9BRT9 223 aa12.62□□□□□ -0.39
CHD3-215ENST00000572750 AGMATQ9BSE5 352 aa12.62□□□□□ -0.39
CHD3-215ENST00000572750 C16orf95Q9H693 158 aa12.62□□□□□ -0.39
CHD3-215ENST00000572750 RNF150Q9ULK6 438 aa12.62□□□□□ -0.39
CHD3-215ENST00000572750 RNF114Q9Y508 228 aa12.62□□□□□ -0.39
CHD3-215ENST00000572750 MMP24Q9Y5R2 645 aa12.62□□□□□ -0.39
CHD3-215ENST00000572750 CCDC160A6NGH7 325 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 SH2D7A6NKC9 451 aaPredicted RBP12.61□□□□□ -0.39
CHD3-215ENST00000572750 RAB29O14966 203 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 DIRAS3O95661 229 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 BLCAPP62952 87 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 LSAMPQ13449 338 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 TMEM95Q3KNT9 176 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 Q6ZS46 218 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 C16orf82Q7Z2V1 217 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 THNSL2Q86YJ6 484 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 BEST4Q8NFU0 473 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 SGMS2Q8NHU3 365 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 SNAPC3Q92966 411 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 AKR1E2Q96JD6 320 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 CMTM3Q96MX0 182 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 ZNF251Q9BRH9 671 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 OR2D2Q9H210 308 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 CCDC59Q9P031 241 aaKnown RBP12.61□□□□□ -0.39
CHD3-215ENST00000572750 PIPOXQ9P0Z9 390 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 ANXA10Q9UJ72 324 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 MOB4Q9Y3A3 225 aa12.61□□□□□ -0.39
CHD3-215ENST00000572750 A0A1B0GUS0 222 aa12.6□□□□□ -0.39
CHD3-215ENST00000572750 FAM25AB3EWG3 89 aa12.6□□□□□ -0.39
CHD3-215ENST00000572750 FAM25CB3EWG5 89 aa12.6□□□□□ -0.39
CHD3-215ENST00000572750 FAM25GB3EWG6 89 aa12.6□□□□□ -0.39
CHD3-215ENST00000572750 AMY1AP04745 511 aa12.6□□□□□ -0.39
CHD3-215ENST00000572750 AMY2AP04746 511 aa12.6□□□□□ -0.39
CHD3-215ENST00000572750 GPR12P47775 334 aa12.6□□□□□ -0.39
CHD3-215ENST00000572750 SRSF4Q08170 494 aaKnown RBP12.6□□□□□ -0.39
CHD3-215ENST00000572750 ABCA11PQ4W5N1 156 aa12.6□□□□□ -0.39
CHD3-215ENST00000572750 FAM71F2Q6NXP2 309 aa12.6□□□□□ -0.39
CHD3-215ENST00000572750 SNX29P2Q8IUI4 249 aa12.6□□□□□ -0.39
CHD3-215ENST00000572750 LAX1Q8IWV1 398 aa12.6□□□□□ -0.39
CHD3-215ENST00000572750 H1FOOQ8IZA3 346 aaPredicted RBP12.6□□□□□ -0.39
CHD3-215ENST00000572750 OR2T6Q8NHC8 308 aa12.6□□□□□ -0.39
CHD3-215ENST00000572750 EAF1Q96JC9 268 aaPredicted RBP12.6□□□□□ -0.39
CHD3-215ENST00000572750 S1PR3Q99500 378 aa12.6□□□□□ -0.39
CHD3-215ENST00000572750 NABP2Q9BQ15 211 aa12.6□□□□□ -0.39
CHD3-215ENST00000572750 TOLLIPQ9H0E2 274 aa12.6□□□□□ -0.39
CHD3-215ENST00000572750 RBM38Q9H0Z9 239 aaKnown RBP12.6□□□□□ -0.39
CHD3-215ENST00000572750 IFT46Q9NQC8 304 aa12.6□□□□□ -0.39
CHD3-215ENST00000572750 MRPS7Q9Y2R9 242 aaKnown RBP12.6□□□□□ -0.39
CHD3-215ENST00000572750 OR8U9P0C7N5 309 aa12.59□□□□□ -0.39
CHD3-215ENST00000572750 NFYAP23511 347 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms