RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ATG5Q9H1Y0 275 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 DAPK2Q9UIK4 370 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 ELF5Q9UKW6 265 aaPredicted RBP11.89□□□□□ -0.51
VPS39-210ENST00000568357 MGAT4AQ9UM21 535 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 ITGB1BP1O14713 200 aa11.88□□□□□ -0.51
VPS39-210ENST00000568357 IGHG2P01859 326 aa11.88□□□□□ -0.51
VPS39-210ENST00000568357 SNRPBP14678 240 aaKnown RBP11.88□□□□□ -0.51
VPS39-210ENST00000568357 HIST1H1DP16402 221 aaKnown RBP11.88□□□□□ -0.51
VPS39-210ENST00000568357 RPL39P5Q59GN2 51 aa11.88□□□□□ -0.51
VPS39-210ENST00000568357 SFXN4Q6P4A7 337 aa11.88□□□□□ -0.51
VPS39-210ENST00000568357 ZNF329Q86UD4 541 aa11.88□□□□□ -0.51
VPS39-210ENST00000568357 MAFIPQ8WZ33 124 aa11.88□□□□□ -0.51
VPS39-210ENST00000568357 ABHD14BQ96IU4 210 aa11.88□□□□□ -0.51
VPS39-210ENST00000568357 ZNF230Q9UIE0 474 aaPredicted RBP11.88□□□□□ -0.51
VPS39-210ENST00000568357 LINC00527Q9UJ94 153 aa11.88□□□□□ -0.51
VPS39-210ENST00000568357 RNF150Q9ULK6 438 aa11.88□□□□□ -0.51
VPS39-210ENST00000568357 A0A087WXM4 84 aa11.87□□□□□ -0.51
VPS39-210ENST00000568357 SERPINE3A8MV23 424 aa11.87□□□□□ -0.51
VPS39-210ENST00000568357 RAB29O14966 203 aa11.87□□□□□ -0.51
VPS39-210ENST00000568357 HSPA12AO43301 675 aa11.87□□□□□ -0.51
VPS39-210ENST00000568357 PROP1O75360 226 aa11.87□□□□□ -0.51
VPS39-210ENST00000568357 FCGR3AP08637 254 aa11.87□□□□□ -0.51
VPS39-210ENST00000568357 GSTT2P0CG29 244 aa11.87□□□□□ -0.51
VPS39-210ENST00000568357 GSTT2BP0CG30 244 aa11.87□□□□□ -0.51
VPS39-210ENST00000568357 CT45A6P0DMU7 189 aa11.87□□□□□ -0.51
VPS39-210ENST00000568357 CT45A5P0DMU8 189 aa11.87□□□□□ -0.51
VPS39-210ENST00000568357 CT45A7P0DMV0 189 aa11.87□□□□□ -0.51
VPS39-210ENST00000568357 SLC35E3Q7Z769 313 aa11.87□□□□□ -0.51
VPS39-210ENST00000568357 OR8H1Q8NGG4 311 aa11.87□□□□□ -0.51
VPS39-210ENST00000568357 ABCG5Q9H222 651 aa11.87□□□□□ -0.51
VPS39-210ENST00000568357 LIN7CQ9NUP9 197 aaKnown RBP11.87□□□□□ -0.51
VPS39-210ENST00000568357 PIPOXQ9P0Z9 390 aa11.87□□□□□ -0.51
VPS39-210ENST00000568357 TET2Q6N021 2002 aaPredicted RBP11.86□□□□□ -0.51
VPS39-210ENST00000568357 A0A1W2PRX2 142 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 TCRBV4S1A1TA0A5B7 111 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 PSMB11A5LHX3 300 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 FABP7O15540 132 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 TNFAIP8O95379 198 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 OPN1MWP04001 364 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 OPN1MW2P0DN77 364 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 OPN1MW3P0DN78 364 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 TGFBR1P36897 503 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 GPR12P47775 334 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 MRPS15P82914 257 aaKnown RBP11.86□□□□□ -0.51
VPS39-210ENST00000568357 CDNFQ49AH0 187 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 IGSF11Q5DX21 431 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 FAM71E2Q8N5Q1 922 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 OR4A4PQ8NGN8 299 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 OR5H6Q8NGV6 325 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 LGALS14Q8TCE9 139 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 R3HDM4Q96D70 268 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 YIPF6Q96EC8 236 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 RASL11BQ9BPW5 248 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 RDH8Q9NYR8 311 aa11.86□□□□□ -0.51
VPS39-210ENST00000568357 IGKV1D-8A0A087WSZ0 117 aa11.85□□□□□ -0.51
VPS39-210ENST00000568357 CNTFRP26992 372 aa11.85□□□□□ -0.51
VPS39-210ENST00000568357 ACTBP60709 375 aa11.85□□□□□ -0.51
VPS39-210ENST00000568357 ARFRP1Q13795 201 aa11.85□□□□□ -0.51
VPS39-210ENST00000568357 IDNKQ5T6J7 187 aa11.85□□□□□ -0.51
VPS39-210ENST00000568357 FAM71F2Q6NXP2 309 aa11.85□□□□□ -0.51
VPS39-210ENST00000568357 GLDNQ6ZMI3 551 aaPredicted RBP11.85□□□□□ -0.51
VPS39-210ENST00000568357 OR4X2Q8NGF9 303 aa11.85□□□□□ -0.51
VPS39-210ENST00000568357 EDARADDQ8WWZ3 215 aa11.85□□□□□ -0.51
VPS39-210ENST00000568357 HSPB9Q9BQS6 159 aa11.85□□□□□ -0.51
VPS39-210ENST00000568357 TOLLIPQ9H0E2 274 aa11.85□□□□□ -0.51
VPS39-210ENST00000568357 GHITMQ9H3K2 345 aa11.85□□□□□ -0.51
VPS39-210ENST00000568357 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.85□□□□□ -0.51
VPS39-210ENST00000568357 TRBV6-7A0A0A0MS04 114 aa11.84□□□□□ -0.51
VPS39-210ENST00000568357 TRIM64CA6NLI5 447 aa11.84□□□□□ -0.51
VPS39-210ENST00000568357 BET1O15155 118 aa11.84□□□□□ -0.51
VPS39-210ENST00000568357 LINC00205P59089 165 aa11.84□□□□□ -0.51
VPS39-210ENST00000568357 KIR2DS1Q14954 304 aa11.84□□□□□ -0.51
VPS39-210ENST00000568357 MMDQ15546 238 aa11.84□□□□□ -0.51
VPS39-210ENST00000568357 C1QL4Q86Z23 238 aa11.84□□□□□ -0.51
VPS39-210ENST00000568357 FOXRED2Q8IWF2 684 aa11.84□□□□□ -0.51
VPS39-210ENST00000568357 STPG2Q8N412 459 aa11.84□□□□□ -0.51
VPS39-210ENST00000568357 DRAXINQ8NBI3 349 aaPredicted RBP11.84□□□□□ -0.51
VPS39-210ENST00000568357 OR4F17Q8NGA8 305 aa11.84□□□□□ -0.51
VPS39-210ENST00000568357 CHPT1Q8WUD6 406 aa11.84□□□□□ -0.51
VPS39-210ENST00000568357 OR4F4Q96R69 305 aa11.84□□□□□ -0.51
VPS39-210ENST00000568357 TSSC4Q9Y5U2 329 aaPredicted RBP11.84□□□□□ -0.51
VPS39-210ENST00000568357 AIREO43918 545 aa11.83□□□□□ -0.52
VPS39-210ENST00000568357 SOX6P35712 828 aa11.83□□□□□ -0.52
VPS39-210ENST00000568357 TALDO1P37837 337 aa11.83□□□□□ -0.52
VPS39-210ENST00000568357 SERPINB10P48595 397 aa11.83□□□□□ -0.52
VPS39-210ENST00000568357 SRSF7Q16629 238 aaKnown RBP eCLIP11.83□□□□□ -0.52
VPS39-210ENST00000568357 ZNF260Q3ZCT1 412 aa11.83□□□□□ -0.52
VPS39-210ENST00000568357 HACD4Q5VWC8 232 aa11.83□□□□□ -0.52
VPS39-210ENST00000568357 FAM131AQ6UXB0 335 aa11.83□□□□□ -0.52
VPS39-210ENST00000568357 Q6ZS49 121 aa11.83□□□□□ -0.52
VPS39-210ENST00000568357 NPBQ8NG41 125 aa11.83□□□□□ -0.52
VPS39-210ENST00000568357 OR5AN1Q8NGI8 311 aa11.83□□□□□ -0.52
VPS39-210ENST00000568357 OR10J5Q8NHC4 309 aa11.83□□□□□ -0.52
VPS39-210ENST00000568357 PHF21AQ96BD5 680 aa11.83□□□□□ -0.52
VPS39-210ENST00000568357 SLC25A38Q96DW6 304 aa11.83□□□□□ -0.52
VPS39-210ENST00000568357 CABLES2Q9BTV7 478 aa11.83□□□□□ -0.52
VPS39-210ENST00000568357 VCX3AQ9NNX9 186 aa11.83□□□□□ -0.52
VPS39-210ENST00000568357 RHBDL2Q9NX52 303 aa11.83□□□□□ -0.52
VPS39-210ENST00000568357 TMEM235A6NFC5 223 aa11.82□□□□□ -0.52
VPS39-210ENST00000568357 H0YJW9 148 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms