RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 J3QT63 122 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 FOLR2P14207 255 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 AGAP20933 346 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 CFPP27918 469 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 SLC38A11Q08AI6 406 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 ZNF880Q6PDB4 577 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 ARV1Q9H2C2 271 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 WFDC1Q9HC57 220 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 TMEM30CPA0ZSE6 113 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 RNF212BA8MTL3 300 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 LINC00205P59089 165 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 SELENOHQ8IZQ5 122 aaKnown RBP12.66□□□□□ -0.38
CUX1-215ENST00000556210 VKORC1L1Q8N0U8 176 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 POM121Q96HA1 1249 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 REPIN1Q9BWE0 567 aaKnown RBP12.66□□□□□ -0.38
CUX1-215ENST00000556210 MUC22E2RYF6 1773 aaPredicted RBP12.66□□□□□ -0.38
CUX1-215ENST00000556210 ACTL6BO94805 426 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 CLDN18P56856 261 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 VWA1Q6PCB0 445 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 A0A1B0GV90 55 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 C21orf140B9A014 251 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 ENSAO43768 121 aaKnown RBP12.66□□□□□ -0.38
CUX1-215ENST00000556210 B3GALT5-AS1P59052 145 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 CCL20P78556 96 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 FAM53AQ6NSI3 398 aaPredicted RBP12.66□□□□□ -0.38
CUX1-215ENST00000556210 ZNF66Q6ZN08 573 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 KIAA1456Q9P272 454 aa12.66□□□□□ -0.38
CUX1-215ENST00000556210 TLN1Q9Y490 2541 aaKnown RBP12.65□□□□□ -0.38
CUX1-215ENST00000556210 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.65□□□□□ -0.383e-7■■■■■ 26.8
CUX1-215ENST00000556210 SSTR5P35346 364 aa12.65□□□□□ -0.38
CUX1-215ENST00000556210 UCP2P55851 309 aa12.65□□□□□ -0.38
CUX1-215ENST00000556210 C10orf91Q5T1B1 145 aa12.65□□□□□ -0.38
CUX1-215ENST00000556210 CDS2O95674 445 aa12.65□□□□□ -0.38
CUX1-215ENST00000556210 NCR3LG1Q68D85 454 aa12.65□□□□□ -0.38
CUX1-215ENST00000556210 IGF2RP11717 2491 aa12.65□□□□□ -0.38
CUX1-215ENST00000556210 ZNF503-AS2A6NEH8 195 aa12.65□□□□□ -0.39
CUX1-215ENST00000556210 ZNF729A6NN14 1252 aaPredicted RBP12.65□□□□□ -0.39
CUX1-215ENST00000556210 GLIPR1P48060 266 aa12.65□□□□□ -0.39
CUX1-215ENST00000556210 GAMTQ14353 236 aa12.65□□□□□ -0.39
CUX1-215ENST00000556210 TUBA4BQ9H853 241 aa12.65□□□□□ -0.39
CUX1-215ENST00000556210 SERTAD4Q9NUC0 356 aa12.65□□□□□ -0.39
CUX1-215ENST00000556210 FBLN5Q9UBX5 448 aa12.65□□□□□ -0.39
CUX1-215ENST00000556210 RPH3ALQ9UNE2 315 aa12.65□□□□□ -0.39
CUX1-215ENST00000556210 NOTCH3Q9UM47 2321 aa12.64□□□□□ -0.39
CUX1-215ENST00000556210 TRAV17A0A0B4J275 112 aa12.64□□□□□ -0.39
CUX1-215ENST00000556210 MAP1LC3B2A6NCE7 125 aa12.64□□□□□ -0.39
CUX1-215ENST00000556210 RNF224P0DH78 156 aa12.64□□□□□ -0.39
CUX1-215ENST00000556210 DEFA4P12838 97 aa12.64□□□□□ -0.39
CUX1-215ENST00000556210 CTSSP25774 331 aa12.64□□□□□ -0.39
CUX1-215ENST00000556210 SSTP61278 116 aa12.64□□□□□ -0.39
CUX1-215ENST00000556210 MOGAT3Q86VF5 341 aa12.64□□□□□ -0.39
CUX1-215ENST00000556210 MAP1LC3BQ9GZQ8 125 aa12.64□□□□□ -0.39
CUX1-215ENST00000556210 PRDM14Q9GZV8 571 aa12.64□□□□□ -0.39
CUX1-215ENST00000556210 PLEKHA3Q9HB20 300 aa12.64□□□□□ -0.39
CUX1-215ENST00000556210 ARHGAP21Q5T5U3 1957 aa12.64□□□□□ -0.39
CUX1-215ENST00000556210 G0S2P27469 103 aa12.64□□□□□ -0.39
CUX1-215ENST00000556210 FOXO1Q12778 655 aa12.64□□□□□ -0.39
CUX1-215ENST00000556210 LYG1Q8N1E2 194 aa12.64□□□□□ -0.39
CUX1-215ENST00000556210 TMEM265A0A087WTH1 108 aa12.64□□□□□ -0.39
CUX1-215ENST00000556210 PSMB3P49720 205 aa12.64□□□□□ -0.39
CUX1-215ENST00000556210 EIF3IQ13347 325 aaKnown RBP12.64□□□□□ -0.39
CUX1-215ENST00000556210 GINS3Q9BRX5 216 aa12.64□□□□□ -0.39
CUX1-215ENST00000556210 HOXA5P20719 270 aa12.63□□□□□ -0.39
CUX1-215ENST00000556210 ACP1P24666 158 aa12.63□□□□□ -0.39
CUX1-215ENST00000556210 SMIM21Q3B7S5 101 aa12.63□□□□□ -0.39
CUX1-215ENST00000556210 KLF14Q8TD94 323 aaPredicted RBP12.63□□□□□ -0.39
CUX1-215ENST00000556210 C1QTNF5Q9BXJ0 243 aa12.63□□□□□ -0.39
CUX1-215ENST00000556210 PTBP3O95758 552 aaKnown RBP12.63□□□□□ -0.39
CUX1-215ENST00000556210 PGA5P0DJD9 388 aa12.63□□□□□ -0.39
CUX1-215ENST00000556210 SLC25A6P12236 298 aa12.63□□□□□ -0.39
CUX1-215ENST00000556210 PAX6P26367 422 aa12.63□□□□□ -0.39
CUX1-215ENST00000556210 FFAR4Q5NUL3 377 aa12.63□□□□□ -0.39
CUX1-215ENST00000556210 C20orf204Q6ZNR8 217 aa12.63□□□□□ -0.39
CUX1-215ENST00000556210 SSMEM1Q8WWF3 244 aa12.63□□□□□ -0.39
CUX1-215ENST00000556210 PINX1Q96BK5 328 aaKnown RBP12.63□□□□□ -0.39
CUX1-215ENST00000556210 PATZ1Q9HBE1 687 aaKnown RBP12.63□□□□□ -0.39
CUX1-215ENST00000556210 EGR1P18146 543 aa12.63□□□□□ -0.39
CUX1-215ENST00000556210 FGFRL1Q8N441 504 aa12.63□□□□□ -0.39
CUX1-215ENST00000556210 RNF122Q9H9V4 155 aa12.63□□□□□ -0.39
CUX1-215ENST00000556210 DYNLRB1Q9NP97 96 aa12.63□□□□□ -0.39
CUX1-215ENST00000556210 TUBD1Q9UJT1 453 aa12.63□□□□□ -0.39
CUX1-215ENST00000556210 EML5Q05BV3 1969 aa12.62□□□□□ -0.39
CUX1-215ENST00000556210 SPINK4O60575 86 aa12.62□□□□□ -0.39
CUX1-215ENST00000556210 TRGC1P0CF51 173 aa12.62□□□□□ -0.39
CUX1-215ENST00000556210 APELAP0DMC3 54 aa12.62□□□□□ -0.39
CUX1-215ENST00000556210 OTX1P32242 354 aaPredicted RBP12.62□□□□□ -0.39
CUX1-215ENST00000556210 FAM214BQ7L5A3 538 aa12.62□□□□□ -0.39
CUX1-215ENST00000556210 LURAP1LQ8IV03 231 aa12.62□□□□□ -0.39
CUX1-215ENST00000556210 Q8WTZ3 238 aa12.62□□□□□ -0.39
CUX1-215ENST00000556210 MSI2Q96DH6 328 aaKnown RBP12.62□□□□□ -0.39
CUX1-215ENST00000556210 BOD1Q96IK1 185 aa12.62□□□□□ -0.39
CUX1-215ENST00000556210 POM121L2Q96KW2 1035 aa12.62□□□□□ -0.39
CUX1-215ENST00000556210 FREM2Q5SZK8 3169 aa12.62□□□□□ -0.39
CUX1-215ENST00000556210 HBZP02008 142 aa12.62□□□□□ -0.39
CUX1-215ENST00000556210 CHRNA7P36544 502 aa12.62□□□□□ -0.39
CUX1-215ENST00000556210 MPV17P39210 176 aa12.62□□□□□ -0.39
CUX1-215ENST00000556210 WNT5AP41221 380 aa12.62□□□□□ -0.39
CUX1-215ENST00000556210 ABLIM2Q6H8Q1 611 aa12.62□□□□□ -0.39
CUX1-215ENST00000556210 ZNF705AQ6ZN79 300 aaPredicted RBP12.62□□□□□ -0.39
CUX1-215ENST00000556210 ADAMTS9Q9P2N4 1935 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms