RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 SLA2Q9H6Q3 261 aa13.58□□□□□ -0.24
CLSTN3-214ENST00000542663 KCNIP1Q9NZI2 227 aa13.58□□□□□ -0.24
CLSTN3-214ENST00000542663 TRBV5-5A0A0J9YX44 114 aa13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 OGG1O15527 345 aa13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 RGS11O94810 467 aa13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 TRGV3P03979 118 aa13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 GLAP06280 429 aa13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 MGMTP16455 207 aa13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 FUT3P21217 361 aa13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 ETV1P50549 477 aa13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 ALDH3A2P51648 485 aa13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 KLF5Q13887 457 aaPredicted RBP13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 PLGLAQ15195 96 aa13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 RPL39P5Q59GN2 51 aa13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 C6orf141Q5SZD1 244 aa13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 DMKNQ6E0U4 476 aaPredicted RBP13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 FAM71F2Q6NXP2 309 aa13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 GLDNQ6ZMI3 551 aaPredicted RBP13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 OR2AK2Q8NG84 335 aa13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 APH1BQ8WW43 257 aa13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 OR14A2Q96R54 314 aa13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 CLCC1Q96S66 551 aa13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 RNF150Q9ULK6 438 aa13.57□□□□□ -0.24
CLSTN3-214ENST00000542663 H0YJW9 148 aa13.56□□□□□ -0.24
CLSTN3-214ENST00000542663 ST8SIA5O15466 376 aa13.56□□□□□ -0.24
CLSTN3-214ENST00000542663 LALBAP00709 142 aa13.56□□□□□ -0.24
CLSTN3-214ENST00000542663 TFAP2AP05549 437 aa13.56□□□□□ -0.24
CLSTN3-214ENST00000542663 RPS11P62280 158 aaKnown RBP eCLIP13.56□□□□□ -0.24
CLSTN3-214ENST00000542663 HMGN3Q15651 99 aa13.56□□□□□ -0.24
CLSTN3-214ENST00000542663 AWAT2Q6E213 333 aa13.56□□□□□ -0.24
CLSTN3-214ENST00000542663 OR9G4Q8NGQ1 327 aa13.56□□□□□ -0.24
CLSTN3-214ENST00000542663 GALMQ96C23 342 aa13.56□□□□□ -0.24
CLSTN3-214ENST00000542663 SMIM19Q96E16 107 aa13.56□□□□□ -0.24
CLSTN3-214ENST00000542663 Q96MT0 163 aa13.56□□□□□ -0.24
CLSTN3-214ENST00000542663 FAM110AQ9BQ89 295 aa13.56□□□□□ -0.24
CLSTN3-214ENST00000542663 TMED9Q9BVK6 235 aa13.56□□□□□ -0.24
CLSTN3-214ENST00000542663 HIPK2Q9H2X6 1198 aa13.56□□□□□ -0.24
CLSTN3-214ENST00000542663 RANGRFQ9HD47 186 aaPredicted RBP13.56□□□□□ -0.24
CLSTN3-214ENST00000542663 FGF20Q9NP95 211 aaPredicted RBP13.56□□□□□ -0.24
CLSTN3-214ENST00000542663 OR5H14A6NHG9 310 aa13.55□□□□□ -0.24
CLSTN3-214ENST00000542663 CA2P00918 260 aa13.55□□□□□ -0.24
CLSTN3-214ENST00000542663 FSTP19883 344 aa13.55□□□□□ -0.24
CLSTN3-214ENST00000542663 ZP3P21754 424 aa13.55□□□□□ -0.24
CLSTN3-214ENST00000542663 ZNF562Q6V9R5 426 aa13.55□□□□□ -0.24
CLSTN3-214ENST00000542663 LINC00322Q6ZN03 302 aaPredicted RBP13.55□□□□□ -0.24
CLSTN3-214ENST00000542663 JAGN1Q8N5M9 183 aa13.55□□□□□ -0.24
CLSTN3-214ENST00000542663 PYDC1Q8WXC3 89 aa13.55□□□□□ -0.24
CLSTN3-214ENST00000542663 PARP12Q9H0J9 701 aaKnown RBP13.55□□□□□ -0.24
CLSTN3-214ENST00000542663 TUBA4BQ9H853 241 aa13.55□□□□□ -0.24
CLSTN3-214ENST00000542663 PIPOXQ9P0Z9 390 aa13.55□□□□□ -0.24
CLSTN3-214ENST00000542663 METTL1Q9UBP6 276 aaKnown RBP13.55□□□□□ -0.24
CLSTN3-214ENST00000542663 ADAM30Q9UKF2 790 aa13.55□□□□□ -0.24
CLSTN3-214ENST00000542663 RPL36Q9Y3U8 105 aaKnown RBP13.55□□□□□ -0.24
CLSTN3-214ENST00000542663 ANKRD34BA5PLL1 514 aa13.54□□□□□ -0.24
CLSTN3-214ENST00000542663 IZUMO1RA6ND01 250 aa13.54□□□□□ -0.24
CLSTN3-214ENST00000542663 H0Y980 276 aa13.54□□□□□ -0.24
CLSTN3-214ENST00000542663 PDCD6O75340 191 aa13.54□□□□□ -0.24
CLSTN3-214ENST00000542663 CRTAPO75718 401 aaPredicted RBP13.54□□□□□ -0.24
CLSTN3-214ENST00000542663 BAG2O95816 211 aa13.54□□□□□ -0.24
CLSTN3-214ENST00000542663 PSG5Q15238 335 aa13.54□□□□□ -0.24
CLSTN3-214ENST00000542663 Q499Y3 187 aa13.54□□□□□ -0.24
CLSTN3-214ENST00000542663 CBR4Q8N4T8 237 aa13.54□□□□□ -0.24
CLSTN3-214ENST00000542663 OR5AN1Q8NGI8 311 aa13.54□□□□□ -0.24
CLSTN3-214ENST00000542663 GHSRQ92847 366 aa13.54□□□□□ -0.24
CLSTN3-214ENST00000542663 WASHC3Q9Y3C0 194 aa13.54□□□□□ -0.24
CLSTN3-214ENST00000542663 TRBV5-7A0A0A0MS05 114 aa13.53□□□□□ -0.24
CLSTN3-214ENST00000542663 H7C2Y5 167 aa13.53□□□□□ -0.24
CLSTN3-214ENST00000542663 RAB29O14966 203 aa13.53□□□□□ -0.24
CLSTN3-214ENST00000542663 RBBP9O75884 186 aa13.53□□□□□ -0.24
CLSTN3-214ENST00000542663 GSTP1P09211 210 aaKnown RBP13.53□□□□□ -0.24
CLSTN3-214ENST00000542663 CD40LGP29965 261 aa13.53□□□□□ -0.24
CLSTN3-214ENST00000542663 MC5RP33032 325 aa13.53□□□□□ -0.24
CLSTN3-214ENST00000542663 SYNJ2BPP57105 145 aa13.53□□□□□ -0.24
CLSTN3-214ENST00000542663 SSBP2P81877 361 aaPredicted RBP13.53□□□□□ -0.24
CLSTN3-214ENST00000542663 SMN1Q16637 294 aaKnown RBP13.53□□□□□ -0.24
CLSTN3-214ENST00000542663 GTSCR1Q86UQ5 136 aa13.53□□□□□ -0.24
CLSTN3-214ENST00000542663 POC5Q8NA72 575 aa13.53□□□□□ -0.24
CLSTN3-214ENST00000542663 IL17DQ8TAD2 202 aa13.53□□□□□ -0.24
CLSTN3-214ENST00000542663 ABHD14BQ96IU4 210 aa13.53□□□□□ -0.24
CLSTN3-214ENST00000542663 PGLYRP3Q96LB9 341 aa13.53□□□□□ -0.24
CLSTN3-214ENST00000542663 SULT4A1Q9BR01 284 aa13.53□□□□□ -0.24
CLSTN3-214ENST00000542663 CKLFQ9UBR5 152 aa13.53□□□□□ -0.24
CLSTN3-214ENST00000542663 SLC23A1Q9UHI7 598 aa13.53□□□□□ -0.24
CLSTN3-214ENST00000542663 C13orf42A0A1B0GVH6 325 aa13.52□□□□□ -0.25
CLSTN3-214ENST00000542663 A0A1W2PPK0 400 aa13.52□□□□□ -0.25
CLSTN3-214ENST00000542663 H3BNX3 289 aa13.52□□□□□ -0.25
CLSTN3-214ENST00000542663 PROP1O75360 226 aa13.52□□□□□ -0.25
CLSTN3-214ENST00000542663 WBP4O75554 376 aaKnown RBP13.52□□□□□ -0.25
CLSTN3-214ENST00000542663 CSN3P07498 182 aa13.52□□□□□ -0.25
CLSTN3-214ENST00000542663 CDH26Q8IXH8 852 aa13.52□□□□□ -0.25
CLSTN3-214ENST00000542663 IL1F10Q8WWZ1 152 aa13.52□□□□□ -0.25
CLSTN3-214ENST00000542663 FAM46BQ96A09 425 aa13.52□□□□□ -0.25
CLSTN3-214ENST00000542663 RNF5Q99942 180 aa13.52□□□□□ -0.25
CLSTN3-214ENST00000542663 AGMATQ9BSE5 352 aa13.52□□□□□ -0.25
CLSTN3-214ENST00000542663 ZNF355PQ9NSJ1 428 aa13.52□□□□□ -0.25
CLSTN3-214ENST00000542663 BABAM2Q9NXR7 383 aa13.52□□□□□ -0.25
CLSTN3-214ENST00000542663 STEAP1Q9UHE8 339 aa13.52□□□□□ -0.25
CLSTN3-214ENST00000542663 LRRC42Q9Y546 428 aa13.52□□□□□ -0.25
CLSTN3-214ENST00000542663 CEPT1Q9Y6K0 416 aa13.52□□□□□ -0.25
CLSTN3-214ENST00000542663 TRBV12-3P01733 135 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 98.7 ms