RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 NCOR1O75376 2440 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 CLDN1O95832 211 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 REG1AP05451 166 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 CELA3AP09093 270 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 FTH1P19P0C7X4 201 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 IL12BP29460 328 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 TAS2R46P59540 309 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 RPL32P62910 135 aaKnown RBP8.08□□□□□ -1.12
CLIP1-214ENST00000540539 GABRA6Q16445 453 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 MEP1BQ16820 701 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 TSPO2Q5TGU0 170 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 PERPQ96FX8 193 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 C18orf12Q96KH6 178 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 SHISA8B8ZZ34 492 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 PIGPP57054 158 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 HLA-DRB5Q30154 266 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 TMEM215Q68D42 235 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 C19orf35Q6ZS72 473 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 FAM19A2Q8N3H0 131 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 SUMF1Q8NBK3 374 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 KCNG3Q8TAE7 436 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 FGF21Q9NSA1 209 aa8.08□□□□□ -1.12
CLIP1-214ENST00000540539 MRPL16Q9NX20 251 aaKnown RBP8.08□□□□□ -1.12
CLIP1-214ENST00000540539 PSMB11A5LHX3 300 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 H7C1C5 153 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 SSSCA1O60232 199 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 IFNA5P01569 189 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 ARL3P36405 182 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 ATP5J2P56134 94 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 RHOBP62745 196 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 ARFRP1Q13795 201 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 TESK1Q15569 626 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 Q56UQ5 140 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 ASCL4Q6XD76 172 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 ZNF841Q6ZN19 808 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 OR4N2Q8NGD1 307 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 ZNF721Q8TF20 911 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 RNF183Q96D59 192 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 C6orf106Q9H6K1 298 aaPredicted RBP8.07□□□□□ -1.12
CLIP1-214ENST00000540539 ST20Q9HBF5 79 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 TBC1D29Q9UFV1 150 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 COL4A2P08572 1712 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 TMEM14DPA8MWL7 114 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 KIAA1324LA8MWY0 1029 aaPredicted RBP8.07□□□□□ -1.12
CLIP1-214ENST00000540539 NDUFS4O43181 175 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 C1orf105O95561 183 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 HNRNPA2B1P22626 353 aaKnown RBP8.07□□□□□ -1.12
CLIP1-214ENST00000540539 TMEM50BP56557 158 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 PRTGQ2VWP7 1150 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 ALG10Q5BKT4 473 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 SFTPA1Q8IWL2 248 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 C2orf73Q8N5S3 287 aaPredicted RBP8.07□□□□□ -1.12
CLIP1-214ENST00000540539 OR2K2Q8NGT1 345 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 CYB5D2Q8WUJ1 264 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 NINJ1Q92982 152 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 BORCS7Q96B45 105 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 MSI2Q96DH6 328 aaKnown RBP8.07□□□□□ -1.12
CLIP1-214ENST00000540539 ARHGAP5-AS1Q96IT6 56 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 TMEM204Q9BSN7 226 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 ZNF286AQ9HBT8 521 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 PNRC2Q9NPJ4 139 aaKnown RBP8.07□□□□□ -1.12
CLIP1-214ENST00000540539 YAE1D1Q9NRH1 226 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 JKAMPQ9P055 326 aa8.07□□□□□ -1.12
CLIP1-214ENST00000540539 THAP10Q9P2Z0 257 aaPredicted RBP8.07□□□□□ -1.12
CLIP1-214ENST00000540539 BOKQ9UMX3 212 aaPredicted RBP8.07□□□□□ -1.12
CLIP1-214ENST00000540539 ARHGAP21Q5T5U3 1957 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 TNRC6AQ8NDV7 1962 aaKnown RBP8.06□□□□□ -1.12
CLIP1-214ENST00000540539 A0A0A6YYD5 115 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 LOC102725191A0A1B0GVB3 256 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 TMEM189A5PLL7 270 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.06□□□□□ -1.12
CLIP1-214ENST00000540539 FCN1O00602 326 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 TMEM50AO95807 157 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 ADH4P08319 380 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 FRMD6-AS1P0C7T7 363 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 SRFP11831 508 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 SLC25A6P12236 298 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 NPBWR2P48146 333 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 GPM6AP51674 278 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 TGFBR3Q03167 851 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 WDR74Q6RFH5 385 aaPredicted RBP8.06□□□□□ -1.12
CLIP1-214ENST00000540539 LRTM2Q8N967 370 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 OR4F5Q8NH21 305 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 ZNF501Q96CX3 271 aaPredicted RBP8.06□□□□□ -1.12
CLIP1-214ENST00000540539 NAA38Q9BRA0 125 aaKnown RBP8.06□□□□□ -1.12
CLIP1-214ENST00000540539 NAA60Q9H7X0 242 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 MMP25Q9NPA2 562 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 SERTAD4Q9NUC0 356 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 HS3ST2Q9Y278 367 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 TMEM14AQ9Y6G1 99 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 VCANP13611 3396 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 MPDZO75970 2070 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 CXorf51AA0A1B0GTR3 108 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 C9orf118A6NHY6 69 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 ANKRD30BLA7E2S9 258 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 K7EQS6 105 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 PNMTP11086 282 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 NTF3P20783 257 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 VDAC1P21796 283 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 NPY1RP25929 384 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms