RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 GAR1Q9NY12 217 aaKnown RBP10.44□□□□□ -0.74
SS18-204ENST00000539244 PIPOXQ9P0Z9 390 aa10.44□□□□□ -0.74
SS18-204ENST00000539244 GHRLQ9UBU3 117 aa10.44□□□□□ -0.74
SS18-204ENST00000539244 CLEC2DQ9UHP7 191 aa10.44□□□□□ -0.74
SS18-204ENST00000539244 EPPK1P58107 5090 aaKnown RBP10.44□□□□□ -0.74
SS18-204ENST00000539244 OR5H14A6NHG9 310 aa10.43□□□□□ -0.74
SS18-204ENST00000539244 LDLRAD4O15165 306 aa10.43□□□□□ -0.74
SS18-204ENST00000539244 HSPA12AO43301 675 aa10.43□□□□□ -0.74
SS18-204ENST00000539244 CRTAPO75718 401 aaPredicted RBP10.43□□□□□ -0.74
SS18-204ENST00000539244 IGLV1-51P01701 117 aa10.43□□□□□ -0.74
SS18-204ENST00000539244 IGHV4-30-4P0DP06 118 aa10.43□□□□□ -0.74
SS18-204ENST00000539244 CAPGP40121 348 aa10.43□□□□□ -0.74
SS18-204ENST00000539244 VEGFCP49767 419 aa10.43□□□□□ -0.74
SS18-204ENST00000539244 LRRC36Q1X8D7 754 aa10.43□□□□□ -0.74
SS18-204ENST00000539244 AKIRIN2Q53H80 203 aa10.43□□□□□ -0.74
SS18-204ENST00000539244 FAM131AQ6UXB0 335 aa10.43□□□□□ -0.74
SS18-204ENST00000539244 NKAIN3Q8N8D7 197 aa10.43□□□□□ -0.74
SS18-204ENST00000539244 CASTOR1Q8WTX7 329 aa10.43□□□□□ -0.74
SS18-204ENST00000539244 RHOVQ96L33 236 aa10.43□□□□□ -0.74
SS18-204ENST00000539244 DERL3Q96Q80 235 aa10.43□□□□□ -0.74
SS18-204ENST00000539244 RNF5Q99942 180 aa10.43□□□□□ -0.74
SS18-204ENST00000539244 SLA2Q9H6Q3 261 aa10.43□□□□□ -0.74
SS18-204ENST00000539244 RNF150Q9ULK6 438 aa10.43□□□□□ -0.74
SS18-204ENST00000539244 A0A1W2PPK0 400 aa10.42□□□□□ -0.74
SS18-204ENST00000539244 FCN1O00602 326 aa10.42□□□□□ -0.74
SS18-204ENST00000539244 RAB29O14966 203 aa10.42□□□□□ -0.74
SS18-204ENST00000539244 RBBP9O75884 186 aa10.42□□□□□ -0.74
SS18-204ENST00000539244 CT45A6P0DMU7 189 aa10.42□□□□□ -0.74
SS18-204ENST00000539244 CT45A5P0DMU8 189 aa10.42□□□□□ -0.74
SS18-204ENST00000539244 CT45A7P0DMV0 189 aa10.42□□□□□ -0.74
SS18-204ENST00000539244 MC5RP33032 325 aa10.42□□□□□ -0.74
SS18-204ENST00000539244 SRSF7Q16629 238 aaKnown RBP eCLIP10.42□□□□□ -0.74
SS18-204ENST00000539244 C10orf67Q8IYJ2 551 aa10.42□□□□□ -0.74
SS18-204ENST00000539244 ZFP41Q8N8Y5 198 aa10.42□□□□□ -0.74
SS18-204ENST00000539244 OR5AN1Q8NGI8 311 aa10.42□□□□□ -0.74
SS18-204ENST00000539244 ISOC1Q96CN7 298 aa10.42□□□□□ -0.74
SS18-204ENST00000539244 SLC23A1Q9UHI7 598 aa10.42□□□□□ -0.74
SS18-204ENST00000539244 STUB1Q9UNE7 303 aa10.42□□□□□ -0.74
SS18-204ENST00000539244 H0YJW9 148 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 DYNC1I1O14576 645 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 ITGB1BP1O14713 200 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 ST8SIA5O15466 376 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 BAG2O95816 211 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 TFAP2AP05549 437 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 CD1AP06126 327 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 TAS2R43P59537 309 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 MED21Q13503 144 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 ACTBL2Q562R1 376 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 ZNF880Q6PDB4 577 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 UNQ5815/PRO19632Q6UWF5 114 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 ZNF562Q6V9R5 426 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 PPP1R27Q86WC6 154 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 PQLC1Q8N2U9 271 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 SVOPQ8N4V2 548 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 ZNF555Q8NEP9 628 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 THRSPQ92748 146 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 FAM46BQ96A09 425 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 TMEM80Q96HE8 168 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 SULT4A1Q9BR01 284 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 AGMATQ9BSE5 352 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 ELOVL1Q9BW60 279 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 SMPD3Q9NY59 655 aaPredicted RBP10.41□□□□□ -0.74
SS18-204ENST00000539244 CNOT2Q9NZN8 540 aaKnown RBP10.41□□□□□ -0.74
SS18-204ENST00000539244 ABRACLQ9P1F3 81 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 STEAP1Q9UHE8 339 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 GAB2Q9UQC2 676 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 WASHC3Q9Y3C0 194 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 A3GALT2U3KPV4 340 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 TNCP24821 2201 aa10.41□□□□□ -0.74
SS18-204ENST00000539244 BIRC6Q9NR09 4857 aa10.4□□□□□ -0.74
SS18-204ENST00000539244 NAPSAO96009 420 aa10.4□□□□□ -0.74
SS18-204ENST00000539244 IGHV3-11P01762 117 aa10.4□□□□□ -0.74
SS18-204ENST00000539244 UBBP0CG47 229 aa10.4□□□□□ -0.74
SS18-204ENST00000539244 CD40LGP29965 261 aa10.4□□□□□ -0.74
SS18-204ENST00000539244 TPPP2P59282 170 aa10.4□□□□□ -0.74
SS18-204ENST00000539244 PLGLAQ15195 96 aa10.4□□□□□ -0.74
SS18-204ENST00000539244 RPL39P5Q59GN2 51 aa10.4□□□□□ -0.74
SS18-204ENST00000539244 ZFAND6Q6FIF0 208 aa10.4□□□□□ -0.74
SS18-204ENST00000539244 LFNGQ8NES3 379 aa10.4□□□□□ -0.74
SS18-204ENST00000539244 FAM103A1Q9BTL3 118 aaKnown RBP10.4□□□□□ -0.74
SS18-204ENST00000539244 H3BUA1 57 aa10.39□□□□□ -0.75
SS18-204ENST00000539244 GSTP1P09211 210 aaKnown RBP10.39□□□□□ -0.75
SS18-204ENST00000539244 ZP3P21754 424 aa10.39□□□□□ -0.75
SS18-204ENST00000539244 MAPK3P27361 379 aaPredicted RBP10.39□□□□□ -0.75
SS18-204ENST00000539244 GLDNQ6ZMI3 551 aaPredicted RBP10.39□□□□□ -0.75
SS18-204ENST00000539244 HAPLN4Q86UW8 402 aa10.39□□□□□ -0.75
SS18-204ENST00000539244 ANKRD13BQ86YJ7 626 aa10.39□□□□□ -0.75
SS18-204ENST00000539244 SGPP2Q8IWX5 399 aa10.39□□□□□ -0.75
SS18-204ENST00000539244 ABHD5Q8WTS1 349 aa10.39□□□□□ -0.75
SS18-204ENST00000539244 IL1F10Q8WWZ1 152 aa10.39□□□□□ -0.75
SS18-204ENST00000539244 MS4A10Q96PG2 267 aa10.39□□□□□ -0.75
SS18-204ENST00000539244 NEDD4LQ96PU5 975 aa10.39□□□□□ -0.75
SS18-204ENST00000539244 SPATA25Q9BR10 227 aa10.39□□□□□ -0.75
SS18-204ENST00000539244 TM2D1Q9BX74 207 aa10.39□□□□□ -0.75
SS18-204ENST00000539244 S100A14Q9HCY8 104 aa10.39□□□□□ -0.75
SS18-204ENST00000539244 RANGRFQ9HD47 186 aaPredicted RBP10.39□□□□□ -0.75
SS18-204ENST00000539244 TRBV6-6A0A0A6YYG2 114 aa10.38□□□□□ -0.75
SS18-204ENST00000539244 EFCAB10A6NFE3 127 aa10.38□□□□□ -0.75
SS18-204ENST00000539244 SLC22A1O15245 554 aa10.38□□□□□ -0.75
SS18-204ENST00000539244 SPDEFO95238 335 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms