RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 IGF2P01344 180 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 ERVFRD-1P60508 538 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 MGAT2Q10469 447 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 PMCHL1Q16048 86 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 FBXW9Q5XUX1 488 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 OR4A47Q6IF82 309 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 OR4A5Q8NH83 315 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 DDB2Q92466 427 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 MEGF10Q96KG7 1140 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 HSF4Q9ULV5 492 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 MMP9P14780 707 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 PNLIPP16233 465 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 GPR6P46095 362 aaPredicted RBP9.27□□□□□ -0.93
CLIP1-209ENST00000537178 PLP1P60201 277 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 EP300Q09472 2414 aaPredicted RBP9.27□□□□□ -0.93
CLIP1-209ENST00000537178 ANAPC1Q9H1A4 1944 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 MYO16Q9Y6X6 1858 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 K7N7A8 449 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 MC5RP33032 325 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 RRN3P1Q2M238 152 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 ZNF441Q8N8Z8 693 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 ZNF784Q8NCA9 323 aaPredicted RBP9.27□□□□□ -0.93
CLIP1-209ENST00000537178 GHITMQ9H3K2 345 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 TREM2Q9NZC2 230 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 HLA-DQA1P01909 254 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 CD74P04233 296 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 PRF1P14222 555 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 RAB9AP51151 201 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 PIGYQ3MUY2 71 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 AURKAIP1Q9NWT8 199 aaPredicted RBP9.27□□□□□ -0.93
CLIP1-209ENST00000537178 SLC25A10Q9UBX3 287 aaPredicted RBP9.27□□□□□ -0.93
CLIP1-209ENST00000537178 MRPS16Q9Y3D3 137 aaKnown RBP9.27□□□□□ -0.93
CLIP1-209ENST00000537178 CABIN1Q9Y6J0 2220 aa9.27□□□□□ -0.93
CLIP1-209ENST00000537178 LOC389332A0A1B0GUA5 103 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 MGST3O14880 152 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 KBTBD11O94819 623 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 HOXB3P14651 431 aaPredicted RBP9.26□□□□□ -0.93
CLIP1-209ENST00000537178 CKS2P33552 79 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 DRD3P35462 400 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 TMEM92Q6UXU6 159 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 OR4B1Q8NGF8 309 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 TUBD1Q9UJT1 453 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 R4GN57 208 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 TRAV8-7A0A075B6U6 113 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 ZNF98A6NK75 572 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 UBE2L6O14933 153 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 PRSS2P07478 247 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 CIRBPQ14011 172 aaKnown RBP9.26□□□□□ -0.93
CLIP1-209ENST00000537178 RNFT1Q5M7Z0 435 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 OR1K1Q8NGR3 316 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 ALG14Q96F25 216 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 MS4A7Q9GZW8 240 aaPredicted RBP9.26□□□□□ -0.93
CLIP1-209ENST00000537178 MIXL1Q9H2W2 232 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 TRAV39A0A0B4J263 110 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 LMX1BO60663 402 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 GAPDHP04406 335 aaKnown RBP9.26□□□□□ -0.93
CLIP1-209ENST00000537178 OR11H7Q8NGC8 314 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 HSPB7Q9UBY9 170 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 WIPI2Q9Y4P8 454 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 H7C2G1 150 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 CLDN14O95500 239 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 CYB5R3P00387 301 aaPredicted RBP9.26□□□□□ -0.93
CLIP1-209ENST00000537178 PRSS8Q16651 343 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 PQLC2Q6ZP29 291 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 EID2BQ96D98 161 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 HSPB9Q9BQS6 159 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 PXMP4Q9Y6I8 212 aa9.26□□□□□ -0.93
CLIP1-209ENST00000537178 NUP214P35658 2090 aaPredicted RBP9.25□□□□□ -0.93
CLIP1-209ENST00000537178 RBFOX2O43251 390 aaKnown RBP eCLIP9.25□□□□□ -0.933e-7■■■□□ 15.9
CLIP1-209ENST00000537178 AGFG2O95081 481 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 SPINK2P20155 84 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 SLC35B1P78383 322 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 TM4SF20Q53R12 229 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 FAM209BQ5JX69 171 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 REC114Q7Z4M0 266 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 PRR7Q8TB68 274 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 PCGF1Q9BSM1 259 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 CEACAM18A8MTB9 384 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 APELAP0DMC3 54 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 PRDX2P32119 198 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 RBM11P57052 281 aaKnown RBP9.25□□□□□ -0.93
CLIP1-209ENST00000537178 C3AR1Q16581 482 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 FADS6Q8N9I5 356 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 ADAD2Q8NCV1 583 aaKnown RBP9.25□□□□□ -0.93
CLIP1-209ENST00000537178 C16orf92Q96LL3 132 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 SOSTQ9BQB4 213 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 RPP25Q9BUL9 199 aaKnown RBP9.25□□□□□ -0.93
CLIP1-209ENST00000537178 PRDM14Q9GZV8 571 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 TMEM56-RWDD3S4R434 201 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 PLA2G10O15496 165 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 HERPUD1Q15011 391 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 HIKESHIQ53FT3 197 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 FAM53AQ6NSI3 398 aaPredicted RBP9.25□□□□□ -0.93
CLIP1-209ENST00000537178 TEX29Q8N6K0 151 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 ADAMTS17Q8TE56 1095 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 BGLAPP02818 100 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 PLPPR5Q32ZL2 321 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 IBA57Q5T440 356 aaKnown RBP9.25□□□□□ -0.93
CLIP1-209ENST00000537178 MMD2Q8IY49 270 aa9.25□□□□□ -0.93
CLIP1-209ENST00000537178 GDF15Q99988 308 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms