RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 PARP11Q9NR21 331 aa8.81□□□□□ -1
VPS28-214ENST00000531032 C3orf84H3BNL1 204 aa8.8□□□□□ -1
VPS28-214ENST00000531032 OR3A3P47888 321 aa8.8□□□□□ -1
VPS28-214ENST00000531032 NDPQ00604 133 aa8.8□□□□□ -1
VPS28-214ENST00000531032 INSL4Q14641 139 aa8.8□□□□□ -1
VPS28-214ENST00000531032 HMGN3Q15651 99 aa8.8□□□□□ -1
VPS28-214ENST00000531032 FAM27D1Q5T7N8 215 aa8.8□□□□□ -1
VPS28-214ENST00000531032 LIN54Q6MZP7 749 aa8.8□□□□□ -1
VPS28-214ENST00000531032 ZNF429Q86V71 674 aa8.8□□□□□ -1
VPS28-214ENST00000531032 OR2AK2Q8NG84 335 aa8.8□□□□□ -1
VPS28-214ENST00000531032 PHYHIPQ92561 330 aa8.8□□□□□ -1
VPS28-214ENST00000531032 TMEM203Q969S6 136 aa8.8□□□□□ -1
VPS28-214ENST00000531032 GALMQ96C23 342 aa8.8□□□□□ -1
VPS28-214ENST00000531032 NEDD4LQ96PU5 975 aa8.8□□□□□ -1
VPS28-214ENST00000531032 OR5B12Q96R08 314 aa8.8□□□□□ -1
VPS28-214ENST00000531032 ASCL2Q99929 193 aa8.8□□□□□ -1
VPS28-214ENST00000531032 SULT4A1Q9BR01 284 aa8.8□□□□□ -1
VPS28-214ENST00000531032 TMEM59Q9BXS4 323 aa8.8□□□□□ -1
VPS28-214ENST00000531032 ISYNA1Q9NPH2 558 aa8.8□□□□□ -1
VPS28-214ENST00000531032 KIAA1456Q9P272 454 aa8.8□□□□□ -1
VPS28-214ENST00000531032 LSM2Q9Y333 95 aaKnown RBP8.8□□□□□ -1
VPS28-214ENST00000531032 LRRC42Q9Y546 428 aa8.8□□□□□ -1
VPS28-214ENST00000531032 SMAD5-AS1Q9Y6J3 95 aa8.8□□□□□ -1
VPS28-214ENST00000531032 SORL1Q92673 2214 aa8.8□□□□□ -1
VPS28-214ENST00000531032 OVOL1O14753 267 aa8.79□□□□□ -1
VPS28-214ENST00000531032 SOX15O60248 233 aa8.79□□□□□ -1
VPS28-214ENST00000531032 ARL6IP5O75915 188 aa8.79□□□□□ -1
VPS28-214ENST00000531032 LY86O95711 162 aa8.79□□□□□ -1
VPS28-214ENST00000531032 PSMA1P25786 263 aaKnown RBP8.79□□□□□ -1
VPS28-214ENST00000531032 TRAM1Q15629 374 aa8.79□□□□□ -1
VPS28-214ENST00000531032 TCTEX1D1Q8N7M0 179 aa8.79□□□□□ -1
VPS28-214ENST00000531032 DCUN1D4Q92564 292 aa8.79□□□□□ -1
VPS28-214ENST00000531032 PLGRKTQ9HBL7 147 aa8.79□□□□□ -1
VPS28-214ENST00000531032 FBXO7Q9Y3I1 522 aa8.79□□□□□ -1
VPS28-214ENST00000531032 NAPSAO96009 420 aa8.78□□□□□ -1
VPS28-214ENST00000531032 UCHL1P09936 223 aa8.78□□□□□ -1
VPS28-214ENST00000531032 CRHBPP24387 322 aa8.78□□□□□ -1
VPS28-214ENST00000531032 HTR2CP28335 458 aa8.78□□□□□ -1
VPS28-214ENST00000531032 RPS25P62851 125 aaKnown RBP8.78□□□□□ -1
VPS28-214ENST00000531032 RPS27AP62979 156 aaKnown RBP8.78□□□□□ -1
VPS28-214ENST00000531032 MLLT11Q13015 90 aaPredicted RBP8.78□□□□□ -1
VPS28-214ENST00000531032 IRF3Q14653 427 aa8.78□□□□□ -1
VPS28-214ENST00000531032 ECSCRQ19T08 205 aa8.78□□□□□ -1
VPS28-214ENST00000531032 ZNF660Q6AZW8 331 aaPredicted RBP8.78□□□□□ -1
VPS28-214ENST00000531032 ZNF880Q6PDB4 577 aa8.78□□□□□ -1
VPS28-214ENST00000531032 FAM131AQ6UXB0 335 aa8.78□□□□□ -1
VPS28-214ENST00000531032 PRSS48Q7RTY5 328 aa8.78□□□□□ -1
VPS28-214ENST00000531032 C6orf201Q7Z4U5 140 aa8.78□□□□□ -1
VPS28-214ENST00000531032 SVOPQ8N4V2 548 aa8.78□□□□□ -1
VPS28-214ENST00000531032 OR6M1Q8NGM8 313 aa8.78□□□□□ -1
VPS28-214ENST00000531032 DLX4Q92988 240 aaPredicted RBP8.78□□□□□ -1
VPS28-214ENST00000531032 FAAP24Q9BTP7 215 aa8.78□□□□□ -1
VPS28-214ENST00000531032 TOLLIPQ9H0E2 274 aa8.78□□□□□ -1
VPS28-214ENST00000531032 ALX4Q9H161 411 aaPredicted RBP8.78□□□□□ -1
VPS28-214ENST00000531032 Q9H521 79 aa8.78□□□□□ -1
VPS28-214ENST00000531032 DUSP21Q9H596 190 aa8.78□□□□□ -1
VPS28-214ENST00000531032 CHMP1AQ9HD42 196 aaPredicted RBP8.78□□□□□ -1
VPS28-214ENST00000531032 TPSG1Q9NRR2 321 aa8.78□□□□□ -1
VPS28-214ENST00000531032 PIPOXQ9P0Z9 390 aa8.78□□□□□ -1
VPS28-214ENST00000531032 ABRACLQ9P1F3 81 aa8.78□□□□□ -1
VPS28-214ENST00000531032 STEAP1Q9UHE8 339 aa8.78□□□□□ -1
VPS28-214ENST00000531032 SLC23A1Q9UHI7 598 aa8.78□□□□□ -1
VPS28-214ENST00000531032 FOXA2Q9Y261 457 aaPredicted RBP8.78□□□□□ -1
VPS28-214ENST00000531032 A0A1W2PN81 502 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 OR5H14A6NHG9 310 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 LINC01619G3V211 115 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 RRHO14718 337 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 RAB29O14966 203 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 ST8SIA5O15466 376 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 SAP30O75446 220 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 LGALS1P09382 135 aaKnown RBP8.77□□□□□ -1.01
VPS28-214ENST00000531032 CT45A6P0DMU7 189 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 CT45A5P0DMU8 189 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 CT45A7P0DMV0 189 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 EGR2P11161 476 aaPredicted RBP8.77□□□□□ -1.01
VPS28-214ENST00000531032 SRMP19623 302 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 CHRNA7P36544 502 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 RANBP1P43487 201 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 MAP2K4P45985 399 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 SLURP1P55000 103 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 CX3CL1P78423 397 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 UNC119Q13432 240 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 TBCEQ15813 527 aaPredicted RBP8.77□□□□□ -1.01
VPS28-214ENST00000531032 RAB11BQ15907 218 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 RPL39P5Q59GN2 51 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 C1orf100Q5SVJ3 147 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 OR10K2Q6IF99 312 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 ZNF367Q7RTV3 350 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 LRRTM1Q86UE6 522 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 SBSPONQ8IVN8 264 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 KCNG3Q8TAE7 436 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 IL1F10Q8WWZ1 152 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 MGLLQ99685 303 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 URM1Q9BTM9 101 aaKnown RBP8.77□□□□□ -1.01
VPS28-214ENST00000531032 TM2D1Q9BX74 207 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 FBXL15Q9H469 300 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 RAB26Q9ULW5 256 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 NUBP2Q9Y5Y2 271 aa8.77□□□□□ -1.01
VPS28-214ENST00000531032 TRBV6-6A0A0A6YYG2 114 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 H0YJW9 148 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms