RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 CTPS2Q9NRF8 586 aa2.16□□□□□ -2.06
CPNE3-204ENST00000517862 CCL28Q9NRJ3 127 aa2.16□□□□□ -2.06
CPNE3-204ENST00000517862 LINC00846Q9NV44 126 aa2.16□□□□□ -2.06
CPNE3-204ENST00000517862 XCL2Q9UBD3 114 aa2.16□□□□□ -2.06
CPNE3-204ENST00000517862 TRAV6A0A075B6T7 132 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 NCBP2LA6PVI3 153 aaKnown RBP2.15□□□□□ -2.07
CPNE3-204ENST00000517862 OR11H12B2RN74 326 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 H7C1H1 209 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 KCNK1O00180 336 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 RFXANKO14593 260 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 SERF1AO75920 110 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 CYB5R3P00387 301 aaPredicted RBP2.15□□□□□ -2.07
CPNE3-204ENST00000517862 MOSP00540 346 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 HSPB1P04792 205 aaKnown RBP2.15□□□□□ -2.07
CPNE3-204ENST00000517862 EIF4EP06730 217 aaKnown RBP2.15□□□□□ -2.07
CPNE3-204ENST00000517862 KLK1P06870 262 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 SERPINA6P08185 405 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 SNRPAP09012 282 aaKnown RBP2.15□□□□□ -2.07
CPNE3-204ENST00000517862 GIPP09681 153 aaPredicted RBP2.15□□□□□ -2.07
CPNE3-204ENST00000517862 CCNOP22674 350 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 PRKACBP22694 351 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 CMA1P23946 247 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 COX7A1P24310 79 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 MAS1LP35410 378 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 GPX4P36969 197 aaPredicted RBP2.15□□□□□ -2.07
CPNE3-204ENST00000517862 ACTBP60709 375 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 ERVS71-1P61550 626 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 MXD1Q05195 221 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 TAF1AQ15573 450 aaPredicted RBP2.15□□□□□ -2.07
CPNE3-204ENST00000517862 NDUFAF6Q330K2 333 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 KHDRBS2Q5VWX1 349 aaKnown RBP2.15□□□□□ -2.07
CPNE3-204ENST00000517862 FAAP20Q6NZ36 180 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 LINC00173Q6ZV60 143 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 MARCH3Q86UD3 253 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 SYCE1Q8N0S2 351 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 PGAM4Q8N0Y7 254 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 CEND1Q8N111 149 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 KRT222Q8N1A0 295 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 Q8N7P7 452 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 CCDC71LQ8N9Z2 235 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 OR51E1Q8TCB6 317 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 RNF138Q8WVD3 245 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 ANKRD7Q92527 254 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 RCN3Q96D15 328 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 MAGEB18Q96M61 343 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 MICU1Q9BPX6 476 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 GABARAPL3Q9BY60 117 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 PCBD2Q9H0N5 130 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 PLGRKTQ9HBL7 147 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 VSIG4Q9Y279 399 aa2.15□□□□□ -2.07
CPNE3-204ENST00000517862 LOC102724200A0A096LPH7 203 aaPredicted RBP2.14□□□□□ -2.07
CPNE3-204ENST00000517862 LOC285095A0A1B0GVY8 99 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 RAB19A4D1S5 217 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 LYRM9A8MSI8 78 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 CENPXA8MT69 81 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 HSBP1L1C9JCN9 74 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 LY6LH3BQJ8 138 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 NME4O00746 187 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 DEFB4AO15263 64 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 HDAC3O15379 428 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 XRCC2O43543 280 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 OR1I1O60431 355 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 SEMA3DO95025 777 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 APOA1P02647 267 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 CATP04040 527 aaKnown RBP2.14□□□□□ -2.07
CPNE3-204ENST00000517862 CHTF8P0CG12 524 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 GATA2P23769 480 aaPredicted RBP2.14□□□□□ -2.07
CPNE3-204ENST00000517862 HLA-DMBP28068 263 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 ELK4P28324 431 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 HRH1P35367 487 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 P2RY4P51582 365 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 CAV2P51636 162 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 UGT2B15P54855 530 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 TBPL1P62380 186 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 PAFAH1B2P68402 229 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 AQP6Q13520 282 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 ZNF266Q14584 549 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 OR7A5Q15622 319 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 ZBED5Q49AG3 693 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 HIGD2BQ4VC39 106 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 ZNF678Q5SXM1 525 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 LPCAT4Q643R3 524 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 DUPD1Q68J44 220 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 ZCCHC23Q6ZST2 131 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 RBM45Q8IUH3 476 aaKnown RBP2.14□□□□□ -2.07
CPNE3-204ENST00000517862 VKORC1L1Q8N0U8 176 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 C7orf33Q8WU49 177 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 LRRC29Q8WV35 223 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 APH1BQ8WW43 257 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 AURKBQ96GD4 344 aaPredicted RBP2.14□□□□□ -2.07
CPNE3-204ENST00000517862 RNF170Q96K19 258 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 NICN1Q9BSH3 213 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 MAP1LC3CQ9BXW4 147 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 YTHDF1Q9BYJ9 559 aaKnown RBP2.14□□□□□ -2.07
CPNE3-204ENST00000517862 SLC19A3Q9BZV2 496 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 C11orf68Q9H3H3 251 aaKnown RBP2.14□□□□□ -2.07
CPNE3-204ENST00000517862 SLC25A22Q9H936 323 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 CXorf21Q9HAI6 301 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 SPACA1Q9HBV2 294 aa2.14□□□□□ -2.07
CPNE3-204ENST00000517862 MCUBQ9NWR8 336 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms