RNA–Protein interactions for RNA: ENST00000517138.1

SCARNA1-201, small Cajal body-specific RNA 1, humanhuman

BASIC

Gene SCARNA1, Length 166 nt, Biotype scaRNA, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARNA1-201ENST00000517138 DDX18Q9NVP1 670 aaKnown RBP0.77□□□□□ -2.29
SCARNA1-201ENST00000517138 SYNJ1O43426 1573 aa0.77□□□□□ -2.29
SCARNA1-201ENST00000517138 TENM2Q9NT68 2774 aa0.77□□□□□ -2.29
SCARNA1-201ENST00000517138 CELSR1Q9NYQ6 3014 aa0.76□□□□□ -2.29
SCARNA1-201ENST00000517138 NBEAQ8NFP9 2946 aa0.76□□□□□ -2.29
SCARNA1-201ENST00000517138 ITPR1Q14643 2758 aa0.76□□□□□ -2.29
SCARNA1-201ENST00000517138 HERC2O95714 4834 aa0.76□□□□□ -2.29
SCARNA1-201ENST00000517138 C9J4A7 227 aa0.76□□□□□ -2.29
SCARNA1-201ENST00000517138 SHOX2O60902 331 aaPredicted RBP0.76□□□□□ -2.29
SCARNA1-201ENST00000517138 EPPINO95925 133 aa0.76□□□□□ -2.29
SCARNA1-201ENST00000517138 UAP1Q16222 522 aaPredicted RBP0.76□□□□□ -2.29
SCARNA1-201ENST00000517138 LAMTOR1Q6IAA8 161 aa0.76□□□□□ -2.29
SCARNA1-201ENST00000517138 MRPS24Q96EL2 167 aaKnown RBP0.76□□□□□ -2.29
SCARNA1-201ENST00000517138 TBX5Q99593 518 aa0.76□□□□□ -2.29
SCARNA1-201ENST00000517138 C11orf49Q9H6J7 331 aa0.76□□□□□ -2.29
SCARNA1-201ENST00000517138 TAS2R13Q9NYV9 303 aa0.76□□□□□ -2.29
SCARNA1-201ENST00000517138 RIF1Q5UIP0 2472 aaKnown RBP0.76□□□□□ -2.29
SCARNA1-201ENST00000517138 MAPKBP1O60336 1514 aa0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 MGAM2Q2M2H8 2515 aa0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 CDK12Q9NYV4 1490 aaPredicted RBP0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 TNIKQ9UKE5 1360 aa0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 TECTAO75443 2155 aa0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 SNAI1O95863 264 aaPredicted RBP0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 CTAG1AP78358 180 aa0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 KRTAP20-1Q3LI63 56 aa0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 HBMQ6B0K9 141 aa0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 Q6ZTI0 123 aa0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 FAM183BPQ6ZVS7 135 aa0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 SYS1Q8N2H4 156 aa0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 CIB1Q99828 191 aa0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 HAUS4Q9H6D7 363 aa0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 RPRD1BQ9NQG5 326 aaKnown RBP0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 RMND1Q9NWS8 449 aa0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 PSMD13Q9UNM6 376 aa0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 STAB2Q8WWQ8 2551 aa0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 DSTQ03001 7570 aaKnown RBP0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 FAT4Q6V0I7 4981 aa0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 WDR87Q6ZQQ6 2873 aa0.75□□□□□ -2.29
SCARNA1-201ENST00000517138 MXRA5Q9NR99 2828 aa0.74□□□□□ -2.29
SCARNA1-201ENST00000517138 DMBT1Q9UGM3 2413 aaPredicted RBP0.74□□□□□ -2.29
SCARNA1-201ENST00000517138 GIMD1P0DJR0 217 aa0.74□□□□□ -2.29
SCARNA1-201ENST00000517138 SLC25A16P16260 332 aa0.74□□□□□ -2.29
SCARNA1-201ENST00000517138 PPP1CCP36873 323 aaKnown RBP0.74□□□□□ -2.29
SCARNA1-201ENST00000517138 DSTNP60981 165 aa0.74□□□□□ -2.29
SCARNA1-201ENST00000517138 FAM162BQ5T6X4 162 aa0.74□□□□□ -2.29
SCARNA1-201ENST00000517138 RASL11AQ6T310 242 aa0.74□□□□□ -2.29
SCARNA1-201ENST00000517138 Q6ZT83 130 aa0.74□□□□□ -2.29
SCARNA1-201ENST00000517138 GLT6D1Q7Z4J2 308 aa0.74□□□□□ -2.29
SCARNA1-201ENST00000517138 YIPF7Q8N8F6 280 aa0.74□□□□□ -2.29
SCARNA1-201ENST00000517138 FAM184AQ8NB25 1140 aa0.74□□□□□ -2.29
SCARNA1-201ENST00000517138 PGLYRP3Q96LB9 341 aa0.74□□□□□ -2.29
SCARNA1-201ENST00000517138 SCML1Q9UN30 329 aa0.74□□□□□ -2.29
SCARNA1-201ENST00000517138 RIMS1Q86UR5 1692 aaKnown RBP0.74□□□□□ -2.29
SCARNA1-201ENST00000517138 KIF21BO75037 1637 aa0.74□□□□□ -2.29
SCARNA1-201ENST00000517138 SPTBN2O15020 2390 aa0.74□□□□□ -2.29
SCARNA1-201ENST00000517138 IGHV3-15A0A0B4J1V0 119 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 B4DEV8 164 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 GNRH2O43555 120 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 CTSEP14091 401 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 PSMA1P25786 263 aaKnown RBP0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 RANBP1P43487 201 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 RPL14P50914 215 aaKnown RBP0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 RAP1GDS1P52306 607 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 GABARAPL2P60520 117 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 DYNLL1P63167 89 aaKnown RBP0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 TRAM1Q15629 374 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 PID1Q7Z2X4 250 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 OR11L1Q8NGX0 322 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 FGF13Q92913 245 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 MGLLQ99685 303 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 EBNA1BP2Q99848 306 aaKnown RBP0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 C11orf1Q9H5F2 150 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 XKR8Q9H6D3 395 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 ANGPT4Q9Y264 503 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 XIRP2A4UGR9 3374 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 NF1P21359 2839 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 CHD2O14647 1828 aaKnown RBP0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 TGP01266 2768 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 PRUNE2Q8WUY3 3088 aa0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 SONP18583 2426 aaKnown RBP0.73□□□□□ -2.29
SCARNA1-201ENST00000517138 KIF27Q86VH2 1401 aa0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 CFAP43Q8NDM7 1665 aa0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 VPS13AQ96RL7 3174 aa0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 SSPOA2VEC9 5147 aa0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 ARFGEF3Q5TH69 2177 aa0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 H3BPC8 53 aa0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 PSMD11O00231 422 aa0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 CDIPTO14735 213 aa0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 VAPBO95292 243 aa0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 ESDP10768 282 aa0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 DEKP35659 375 aaKnown RBP0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 AKR1C2P52895 323 aa0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 TRIP13Q15645 432 aaPredicted RBP0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 DEFB132Q7Z7B7 95 aa0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 OR5D18Q8NGL1 313 aa0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 OR5P2Q8WZ92 322 aa0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 GALMQ96C23 342 aa0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 CDCA4Q9BXL8 241 aa0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 LOC400499M0QZD8 3231 aa0.72□□□□□ -2.29
SCARNA1-201ENST00000517138 BIVM-ERCC5R4GMW8 1640 aa0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms