RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 POLR3KQ9Y2Y1 108 aaPredicted RBP6.26□□□□□ -1.41
CLIP1-205ENST00000514271 SLC22A20A6NK97 555 aa6.26□□□□□ -1.41
CLIP1-205ENST00000514271 GEMIN2O14893 280 aaKnown RBP6.26□□□□□ -1.41
CLIP1-205ENST00000514271 TMPRSS2O15393 492 aa6.26□□□□□ -1.41
CLIP1-205ENST00000514271 CD55P08174 381 aa6.26□□□□□ -1.41
CLIP1-205ENST00000514271 RFPL3SP0C7P2 107 aa6.26□□□□□ -1.41
CLIP1-205ENST00000514271 GNRHRP30968 328 aa6.26□□□□□ -1.41
CLIP1-205ENST00000514271 RAB2AP61019 212 aa6.26□□□□□ -1.41
CLIP1-205ENST00000514271 SLC9A3R2Q15599 337 aa6.26□□□□□ -1.41
CLIP1-205ENST00000514271 MRGPRGQ86SM5 289 aa6.26□□□□□ -1.41
CLIP1-205ENST00000514271 YRDCQ86U90 279 aaKnown RBP6.26□□□□□ -1.41
CLIP1-205ENST00000514271 GGNQ86UU5 652 aa6.26□□□□□ -1.41
CLIP1-205ENST00000514271 FAM185AQ8N0U4 392 aa6.26□□□□□ -1.41
CLIP1-205ENST00000514271 CYB561D1Q8N8Q1 229 aa6.26□□□□□ -1.41
CLIP1-205ENST00000514271 GPR35Q9HC97 309 aa6.26□□□□□ -1.41
CLIP1-205ENST00000514271 CKLFQ9UBR5 152 aa6.26□□□□□ -1.41
CLIP1-205ENST00000514271 MRPS28Q9Y2Q9 187 aaKnown RBP6.26□□□□□ -1.41
CLIP1-205ENST00000514271 HELTA6NFD8 242 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 OVOL3O00110 214 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 LY86O95711 162 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 APLNRP35414 380 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 KIAA0141Q14154 515 aaPredicted RBP6.25□□□□□ -1.41
CLIP1-205ENST00000514271 TMEM241Q24JQ0 296 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 TPTE2P1Q5T6R2 138 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 LYZL2Q7Z4W2 148 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 RBMXL1Q96E39 390 aaKnown RBP6.25□□□□□ -1.41
CLIP1-205ENST00000514271 MEGF10Q96KG7 1140 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 FREM2Q5SZK8 3169 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 IGKV1-6A0A0C4DH72 117 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 ZNF587BE7ETH6 402 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 MMP23AO75900 390 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 IGKV1-39P01597 117 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 IGKV1D-39P04432 117 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 IFNA6P05013 189 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 MC5RP33032 325 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 SNU13P55769 128 aaKnown RBP6.25□□□□□ -1.41
CLIP1-205ENST00000514271 YPEL3P61236 119 aaPredicted RBP6.25□□□□□ -1.41
CLIP1-205ENST00000514271 C3AR1Q16581 482 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 H1FOOQ8IZA3 346 aaPredicted RBP6.25□□□□□ -1.41
CLIP1-205ENST00000514271 LINC00470Q9BZP3 86 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 PGPEP1Q9NXJ5 209 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 SHANK1Q9Y566 2161 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 MYO7BQ6PIF6 2116 aa6.25□□□□□ -1.41
CLIP1-205ENST00000514271 TRGV8A0A0C4DH27 118 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 CCL21O00585 134 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 SPRY1O43609 319 aaPredicted RBP6.24□□□□□ -1.41
CLIP1-205ENST00000514271 CLDN14O95500 239 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 CD2P06729 351 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 NPPCP23582 126 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 SRSF2Q01130 221 aaKnown RBP6.24□□□□□ -1.41
CLIP1-205ENST00000514271 GUSBP1Q15486 140 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 PHYHD1Q5SRE7 291 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 TGIF2LXQ8IUE1 241 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 TVP23CQ96ET8 276 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 PFDN5Q99471 154 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 PRRG4Q9BZD6 226 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 LIPGQ9Y5X9 500 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 COL6A6A6NMZ7 2263 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 AQP7P3A6NL99 342 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 GLI4P10075 376 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 ZNF14P17017 642 aaPredicted RBP6.24□□□□□ -1.41
CLIP1-205ENST00000514271 GNLYP22749 145 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 COL10A1Q03692 680 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 KISS1Q15726 138 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 IAH1Q2TAA2 248 aaPredicted RBP6.24□□□□□ -1.41
CLIP1-205ENST00000514271 C3orf36Q3SXR2 165 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 PLXDC2Q6UX71 529 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 CYP2G1PQ6ZSU1 146 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 DOK3Q7L591 496 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 OR1P1Q8NH06 330 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 OR10A2Q9H208 303 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 JKAMPQ9P055 326 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 FAM90A10PA6NDY2 464 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 FAM90A18PA6NE21 464 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 FAM90A16PA6NEW6 464 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 FAM90A20PA6NIJ5 464 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 FAM90A8PA6NJQ4 464 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 FAM90A7PA6NKC0 464 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 FAM90A22PA8MWA6 464 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 FAM90A12PA8MX19 464 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 FAM90A5PA8MXJ8 464 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 FAM90A23PA8MXZ1 464 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 ZNF878C9JN71 531 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 PRSS46E5RG02 174 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 F8WDY8 70 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 G3V3Y1 287 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 IGKV1D-33P01593 117 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 IGKV1-33P01594 117 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 FAM90A15PP0C7V4 464 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 FAM90A13PP0C7W8 464 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 FAM90A14PP0C7W9 464 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 FAM90A24PP0C7X0 464 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 PI3P19957 117 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 TAS2R30P59541 319 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 UBE2NP61088 152 aaKnown RBP6.24□□□□□ -1.41
CLIP1-205ENST00000514271 SCGB2A2Q13296 93 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 PRSS57Q6UWY2 283 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 TMEM252Q8N6L7 170 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 OR5D18Q8NGL1 313 aa6.24□□□□□ -1.41
CLIP1-205ENST00000514271 OR10D4PQ8NGN7 298 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms