RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 OR5D13Q8NGL4 314 aa10.29□□□□□ -0.76
LIMCH1-213ENST00000511496 OR1K1Q8NGR3 316 aa10.29□□□□□ -0.76
LIMCH1-213ENST00000511496 TXNIPQ9H3M7 391 aa10.29□□□□□ -0.76
LIMCH1-213ENST00000511496 CRIM1Q9NZV1 1036 aa10.29□□□□□ -0.76
LIMCH1-213ENST00000511496 A0A087X0K7 114 aa10.29□□□□□ -0.76
LIMCH1-213ENST00000511496 SPAARA0A1B0GVQ0 90 aa10.29□□□□□ -0.76
LIMCH1-213ENST00000511496 C7orf71A4D174 169 aa10.29□□□□□ -0.76
LIMCH1-213ENST00000511496 SIRPB1O00241 398 aa10.29□□□□□ -0.76
LIMCH1-213ENST00000511496 MLNRO43193 412 aa10.29□□□□□ -0.76
LIMCH1-213ENST00000511496 SEC13P55735 322 aa10.29□□□□□ -0.76
LIMCH1-213ENST00000511496 GNB1P62873 340 aa10.29□□□□□ -0.76
LIMCH1-213ENST00000511496 SRSF7Q16629 238 aaKnown RBP eCLIP10.29□□□□□ -0.76
LIMCH1-213ENST00000511496 WDR82Q6UXN9 313 aa10.29□□□□□ -0.76
LIMCH1-213ENST00000511496 ZNF788Q6ZQV5 615 aa10.29□□□□□ -0.76
LIMCH1-213ENST00000511496 OR4A5Q8NH83 315 aa10.29□□□□□ -0.76
LIMCH1-213ENST00000511496 STARD5Q9NSY2 213 aa10.29□□□□□ -0.76
LIMCH1-213ENST00000511496 KNL1Q8NG31 2342 aa10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 LOC102725191A0A1B0GVB3 256 aa10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 ZNF207O43670 478 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 PGCP20142 388 aa10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 ATP5G3P48201 142 aa10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 FABP6P51161 128 aa10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 SPANXN5Q5MJ07 72 aa10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 ZNF324BQ6AW86 544 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 GTF2H5Q6ZYL4 71 aa10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 ZNF525Q8N782 197 aa10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 OR10G9Q8NGN4 311 aa10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 OR10G7Q8NGN6 311 aa10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 RNF133Q8WVZ7 376 aa10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 LMLNQ96KR4 655 aa10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 EOMESO95936 686 aa10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 EIF3IQ13347 325 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 ACSF3Q4G176 576 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 SHISA2Q6UWI4 295 aa10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 C12orf54Q6X4T0 127 aa10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 DEFB128Q7Z7B8 93 aa10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 OR8B12Q8NGG6 310 aa10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 POLR2AP24928 1970 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 DIDO1Q9BTC0 2240 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-213ENST00000511496 FBLL1A6NHQ2 334 aaKnown RBP10.27□□□□□ -0.76
LIMCH1-213ENST00000511496 ZNF10P21506 573 aaPredicted RBP10.27□□□□□ -0.76
LIMCH1-213ENST00000511496 OR2Z1Q8NG97 314 aa10.27□□□□□ -0.76
LIMCH1-213ENST00000511496 FAM222BQ8WU58 562 aa10.27□□□□□ -0.76
LIMCH1-213ENST00000511496 PSMG3Q9BT73 122 aaPredicted RBP10.27□□□□□ -0.76
LIMCH1-213ENST00000511496 EMC6Q9BV81 110 aa10.27□□□□□ -0.76
LIMCH1-213ENST00000511496 PSENENQ9NZ42 101 aa10.27□□□□□ -0.76
LIMCH1-213ENST00000511496 hDV102S1A0JD36 115 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 SPINT1O43278 529 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 HCRTR1O43613 425 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 VDAC1P21796 283 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 NPY1RP25929 384 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 ZNF121P58317 390 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 RPS16P62249 146 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 RSPO4Q2I0M5 234 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 LRRC75BQ2VPJ9 315 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 ACSM6Q6P461 480 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 ZDHHC23Q8IYP9 409 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 PRR22Q8IZ63 422 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 TSKUQ8WUA8 353 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 POM121L2Q96KW2 1035 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 QTRT1Q9BXR0 403 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 MED29Q9NX70 200 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 ESPL1Q14674 2120 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 SLC22A20A6NK97 555 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 FOXI3A8MTJ6 420 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 H0YIG0 161 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 SNAI2O43623 268 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 CD5LO43866 347 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 APOA2P02652 100 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 C19orf35Q6ZS72 473 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 BATF2Q8N1L9 274 aa10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 APOBEC3DQ96AK3 386 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-213ENST00000511496 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 SLC25A17O43808 307 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 HSBP1O75506 76 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 PPYP01298 95 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 ZNF17P17021 662 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 RAB30Q15771 203 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 TAF15Q92804 592 aaKnown RBP eCLIP10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 PPP1R3CQ9UQK1 317 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 CCL26Q9Y258 94 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 RANBP2P49792 3224 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 SSTR5P35346 364 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 CEACAM21Q3KPI0 293 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 OR4P4Q8NGL7 312 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 OR1E3Q8WZA6 343 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 NINJ1Q92982 152 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 VSTM2LQ96N03 204 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 DNAJC5Q9H3Z4 198 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 PSG11Q9UQ72 335 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 LHFPL6Q9Y693 200 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 A0A0G2JRQ6 117 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 CTXND1A0A1B0GTU2 59 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 TRAPPC2LH3BP13 241 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 H3BUT2 72 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 K7EQM0 130 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 TCL1AP56279 114 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 RPS15AP62244 130 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 IGFBP7Q16270 282 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 PRAMEF5Q5TYX0 476 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms