RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 IL1F10Q8WWZ1 152 aa13.61□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 RAB40CQ96S21 281 aa13.61□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 C12orf49Q9H741 205 aa13.61□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 UNKLQ9H9P5 680 aaKnown RBP13.61□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 KALRNO60229 2985 aa13.61□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 A0A1W2PR80 420 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 J3QT63 122 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 DFFBO76075 338 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 IGKV1-5P01602 117 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 NUTF2P61970 127 aaKnown RBP13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 RPL23AP62750 156 aaKnown RBP13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 TLE4Q04727 773 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 CLN3Q13286 438 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 MDP1Q86V88 176 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 LSM10Q969L4 123 aaKnown RBP13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 GPR87Q9BY21 358 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 ABI3Q9P2A4 366 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 TRAV1-1A0A0B4J248 108 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 MARCH11A6NNE9 402 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 TSTD3H0UI37 97 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 MEOX1P50221 254 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 ARL16Q0P5N6 197 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 COTL1Q14019 142 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 RTP5Q14D33 572 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 ZNF585BQ52M93 769 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 ZNF429Q86V71 674 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 MCEMP1Q8IX19 187 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 RBMXL1Q96E39 390 aaKnown RBP13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 MISP3Q96FF7 219 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 CACNG5Q9UF02 275 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 WSB1Q9Y6I7 421 aa13.6□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 A0A087WWC5 75 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 A0A087X0M5 115 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 A0A1B0GX30 115 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 CRYABP02511 175 aaKnown RBP13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 SP1P08047 785 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 PAX1P15863 534 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 HOXA5P20719 270 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 TAGLN2P37802 199 aaKnown RBP13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 CEBPGP53567 150 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 DLK1P80370 383 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 ZNF497Q6ZNH5 498 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 HAPLN4Q86UW8 402 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 S100PBPQ96BU1 408 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 PKD1L2Q7Z442 2459 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 LOC102723971A0A1B0GUV8 181 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 C21orf140B9A014 251 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 ATXN7O15265 892 aaPredicted RBP13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 CNOT4O95628 575 aaKnown RBP13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 HBE1P02100 147 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 S100A2P29034 98 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 UBE2KP61086 200 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 ERVK11-1P61568 191 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 KHDC3LQ587J8 217 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 MYPOPQ86VE0 399 aaPredicted RBP13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 MDS2Q8NDY4 140 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 CA5BP1Q8WTZ4 195 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 PPP1R3CQ9UQK1 317 aa13.59□□□□□ -0.23
MSH5-SAPCD1-208ENST00000498473 SIRPB1O00241 398 aa13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 SYNGR2O43760 224 aa13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 OR2H2O95918 312 aa13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 IFNA5P01569 189 aa13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 P4HA3Q7Z4N8 544 aa13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 UBALD1Q8TB05 177 aa13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 RSG1Q9BU20 258 aa13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 VSIRQ9H7M9 311 aa13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 MSRB2Q9Y3D2 182 aa13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 IFNA17P01571 189 aa13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 IAPPP10997 89 aa13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 MDH2P40926 338 aaKnown RBP13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 CDX1P47902 265 aaPredicted RBP13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 FBXW9Q5XUX1 488 aa13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 ZNF343Q6P1L6 599 aa13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 ZNF525Q8N782 197 aa13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 SCCPDHQ8NBX0 429 aa13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 TVP23CQ96ET8 276 aa13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 RPRMQ9NS64 109 aa13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 MMP24Q9Y5R2 645 aa13.58□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 EPG5Q9HCE0 2579 aa13.57□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 PIGBOS1A0A0B4J2F0 54 aa13.57□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 LRP5LA4QPB2 252 aa13.57□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 CXCL1P09341 107 aa13.57□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 ELOBQ15370 118 aa13.57□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 ZNF726P1Q15940 193 aa13.57□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 MOB1BQ7L9L4 216 aa13.57□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 PRR18Q8N4B5 295 aa13.57□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 SVIPQ8NHG7 77 aa13.57□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 Q8WTZ3 238 aa13.57□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 RAB24Q969Q5 203 aa13.57□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 PSENENQ9NZ42 101 aa13.57□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 RAXQ9Y2V3 346 aa13.57□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 CELA3BP08861 270 aa13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 METTL15P1P0C7V9 234 aa13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 SLC10A1Q14973 349 aa13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 CYB5R2Q6BCY4 276 aa13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 SSX7Q7RTT5 188 aa13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 OR10G4Q8NGN3 311 aa13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 WDYHV1Q96HA8 205 aa13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 RTL8AQ9BWD3 113 aa13.56□□□□□ -0.24
MSH5-SAPCD1-208ENST00000498473 GPR61Q9BZJ8 451 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms