RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 RITA1Q96K30 269 aa19.48■□□□□ 0.71
UPF3A-209ENST00000492270 HSPB9Q9BQS6 159 aa19.48■□□□□ 0.71
UPF3A-209ENST00000492270 CHCHD6Q9BRQ6 235 aa19.48■□□□□ 0.71
UPF3A-209ENST00000492270 TSSC4Q9Y5U2 329 aaPredicted RBP19.48■□□□□ 0.71
UPF3A-209ENST00000492270 G3V4G9 280 aa19.47■□□□□ 0.71
UPF3A-209ENST00000492270 CLEC2LP0C7M8 214 aa19.47■□□□□ 0.71
UPF3A-209ENST00000492270 ZBTB25P24278 435 aa19.47■□□□□ 0.71
UPF3A-209ENST00000492270 GADD45AP24522 165 aa19.47■□□□□ 0.71
UPF3A-209ENST00000492270 CNTFRP26992 372 aa19.47■□□□□ 0.71
UPF3A-209ENST00000492270 CEACAM6P40199 344 aa19.47■□□□□ 0.71
UPF3A-209ENST00000492270 CHPT1Q8WUD6 406 aa19.47■□□□□ 0.71
UPF3A-209ENST00000492270 MAFIPQ8WZ33 124 aa19.47■□□□□ 0.71
UPF3A-209ENST00000492270 RASL11BQ9BPW5 248 aa19.47■□□□□ 0.71
UPF3A-209ENST00000492270 AGMATQ9BSE5 352 aa19.47■□□□□ 0.71
UPF3A-209ENST00000492270 C11orf54Q9H0W9 315 aaPredicted RBP19.47■□□□□ 0.71
UPF3A-209ENST00000492270 TRDCB7Z8K6 153 aa19.46■□□□□ 0.71
UPF3A-209ENST00000492270 HSPA12AO43301 675 aa19.46■□□□□ 0.71
UPF3A-209ENST00000492270 FCGR3AP08637 254 aa19.46■□□□□ 0.71
UPF3A-209ENST00000492270 HIST1H1DP16402 221 aaKnown RBP19.46■□□□□ 0.71
UPF3A-209ENST00000492270 SDC2P34741 201 aa19.46■□□□□ 0.71
UPF3A-209ENST00000492270 TPRA1Q86W33 373 aa19.46■□□□□ 0.71
UPF3A-209ENST00000492270 FOXRED2Q8IWF2 684 aa19.46■□□□□ 0.71
UPF3A-209ENST00000492270 STPG2Q8N412 459 aa19.46■□□□□ 0.71
UPF3A-209ENST00000492270 OR8H1Q8NGG4 311 aa19.46■□□□□ 0.71
UPF3A-209ENST00000492270 PTX4Q96A99 478 aa19.46■□□□□ 0.71
UPF3A-209ENST00000492270 ATG5Q9H1Y0 275 aa19.46■□□□□ 0.71
UPF3A-209ENST00000492270 PIPOXQ9P0Z9 390 aa19.46■□□□□ 0.71
UPF3A-209ENST00000492270 DAPK2Q9UIK4 370 aa19.46■□□□□ 0.71
UPF3A-209ENST00000492270 ELF5Q9UKW6 265 aaPredicted RBP19.46■□□□□ 0.71
UPF3A-209ENST00000492270 LOC100506127A0A0U1RQW1 187 aa19.45■□□□□ 0.7
UPF3A-209ENST00000492270 RAB29O14966 203 aa19.45■□□□□ 0.7
UPF3A-209ENST00000492270 SNRPBP14678 240 aaKnown RBP19.45■□□□□ 0.7
UPF3A-209ENST00000492270 CD36P16671 472 aa19.45■□□□□ 0.7
UPF3A-209ENST00000492270 ACTBP60709 375 aa19.45■□□□□ 0.7
UPF3A-209ENST00000492270 MRPS15P82914 257 aaKnown RBP19.45■□□□□ 0.7
UPF3A-209ENST00000492270 MXD1Q05195 221 aa19.45■□□□□ 0.7
UPF3A-209ENST00000492270 MMDQ15546 238 aa19.45■□□□□ 0.7
UPF3A-209ENST00000492270 GLDNQ6ZMI3 551 aaPredicted RBP19.45■□□□□ 0.7
UPF3A-209ENST00000492270 KCTD7Q96MP8 289 aa19.45■□□□□ 0.7
UPF3A-209ENST00000492270 ZNF230Q9UIE0 474 aaPredicted RBP19.45■□□□□ 0.7
UPF3A-209ENST00000492270 METTL21EPA6NDL7 271 aa19.44■□□□□ 0.7
UPF3A-209ENST00000492270 ITGB1BP1O14713 200 aa19.44■□□□□ 0.7
UPF3A-209ENST00000492270 CT45A6P0DMU7 189 aa19.44■□□□□ 0.7
UPF3A-209ENST00000492270 CT45A5P0DMU8 189 aa19.44■□□□□ 0.7
UPF3A-209ENST00000492270 CT45A7P0DMV0 189 aa19.44■□□□□ 0.7
UPF3A-209ENST00000492270 FAM71F2Q6NXP2 309 aa19.44■□□□□ 0.7
UPF3A-209ENST00000492270 SFXN4Q6P4A7 337 aa19.44■□□□□ 0.7
UPF3A-209ENST00000492270 FAM131AQ6UXB0 335 aa19.44■□□□□ 0.7
UPF3A-209ENST00000492270 EDARADDQ8WWZ3 215 aa19.44■□□□□ 0.7
UPF3A-209ENST00000492270 CENPOQ9BU64 300 aa19.44■□□□□ 0.7
UPF3A-209ENST00000492270 RNF150Q9ULK6 438 aa19.44■□□□□ 0.7
UPF3A-209ENST00000492270 AP4M1O00189 453 aa19.43■□□□□ 0.7
UPF3A-209ENST00000492270 FABP7O15540 132 aa19.43■□□□□ 0.7
UPF3A-209ENST00000492270 PF4V1P10720 104 aa19.43■□□□□ 0.7
UPF3A-209ENST00000492270 IGSF11Q5DX21 431 aa19.43■□□□□ 0.7
UPF3A-209ENST00000492270 SAMD5Q5TGI4 173 aa19.43■□□□□ 0.7
UPF3A-209ENST00000492270 LGALS14Q8TCE9 139 aa19.43■□□□□ 0.7
UPF3A-209ENST00000492270 RDH8Q9NYR8 311 aa19.43■□□□□ 0.7
UPF3A-209ENST00000492270 PROP1O75360 226 aa19.42■□□□□ 0.7
UPF3A-209ENST00000492270 GSTT2P0CG29 244 aa19.42■□□□□ 0.7
UPF3A-209ENST00000492270 GSTT2BP0CG30 244 aa19.42■□□□□ 0.7
UPF3A-209ENST00000492270 SOX6P35712 828 aa19.42■□□□□ 0.7
UPF3A-209ENST00000492270 ARFRP1Q13795 201 aa19.42■□□□□ 0.7
UPF3A-209ENST00000492270 C18orf65Q6ZTR6 163 aa19.42■□□□□ 0.7
UPF3A-209ENST00000492270 OR4A4PQ8NGN8 299 aa19.42■□□□□ 0.7
UPF3A-209ENST00000492270 NOTCH3Q9UM47 2321 aa19.42■□□□□ 0.7
UPF3A-209ENST00000492270 BET1O15155 118 aa19.41■□□□□ 0.7
UPF3A-209ENST00000492270 SLC35B1P78383 322 aa19.41■□□□□ 0.7
UPF3A-209ENST00000492270 PDLIM3Q53GG5 364 aaPredicted RBP19.41■□□□□ 0.7
UPF3A-209ENST00000492270 CABLES2Q9BTV7 478 aa19.41■□□□□ 0.7
UPF3A-209ENST00000492270 ZNF107Q9UII5 783 aaPredicted RBP19.41■□□□□ 0.7
UPF3A-209ENST00000492270 IGKV1D-8A0A087WSZ0 117 aa19.4■□□□□ 0.7
UPF3A-209ENST00000492270 NBR2O15453 112 aa19.4■□□□□ 0.7
UPF3A-209ENST00000492270 TGFBR1P36897 503 aa19.4■□□□□ 0.7
UPF3A-209ENST00000492270 LINC00205P59089 165 aa19.4■□□□□ 0.7
UPF3A-209ENST00000492270 RPL23AP62750 156 aaKnown RBP19.4■□□□□ 0.7
UPF3A-209ENST00000492270 KIR2DS1Q14954 304 aa19.4■□□□□ 0.7
UPF3A-209ENST00000492270 BEAN1Q3B7T3 259 aa19.4■□□□□ 0.7
UPF3A-209ENST00000492270 OXLD1Q5BKU9 147 aa19.4■□□□□ 0.7
UPF3A-209ENST00000492270 DRAXINQ8NBI3 349 aaPredicted RBP19.4■□□□□ 0.7
UPF3A-209ENST00000492270 PHF21AQ96BD5 680 aa19.4■□□□□ 0.7
UPF3A-209ENST00000492270 H0YJW9 148 aa19.39■□□□□ 0.69
UPF3A-209ENST00000492270 CDNFQ49AH0 187 aa19.39■□□□□ 0.69
UPF3A-209ENST00000492270 LCNL1Q6ZST4 164 aa19.39■□□□□ 0.69
UPF3A-209ENST00000492270 TSPAN14Q8NG11 270 aa19.39■□□□□ 0.69
UPF3A-209ENST00000492270 OR5H6Q8NGV6 325 aa19.39■□□□□ 0.69
UPF3A-209ENST00000492270 TOLLIPQ9H0E2 274 aa19.39■□□□□ 0.69
UPF3A-209ENST00000492270 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP19.39■□□□□ 0.69
UPF3A-209ENST00000492270 TRBV6-7A0A0A0MS04 114 aa19.38■□□□□ 0.69
UPF3A-209ENST00000492270 OR5H14A6NHG9 310 aa19.38■□□□□ 0.69
UPF3A-209ENST00000492270 TNFAIP8O95379 198 aa19.38■□□□□ 0.69
UPF3A-209ENST00000492270 PF4P02776 101 aa19.38■□□□□ 0.69
UPF3A-209ENST00000492270 TALDO1P37837 337 aa19.38■□□□□ 0.69
UPF3A-209ENST00000492270 PRKDCP78527 4128 aaKnown RBP19.38■□□□□ 0.69
UPF3A-209ENST00000492270 NPBQ8NG41 125 aa19.38■□□□□ 0.69
UPF3A-209ENST00000492270 GHITMQ9H3K2 345 aa19.38■□□□□ 0.69
UPF3A-209ENST00000492270 ZNF221Q9UK13 617 aa19.38■□□□□ 0.69
UPF3A-209ENST00000492270 A0A087WXM4 84 aa19.37■□□□□ 0.69
UPF3A-209ENST00000492270 NDUFA3O95167 84 aa19.37■□□□□ 0.69
UPF3A-209ENST00000492270 CD33P20138 364 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms