RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 PROP1O75360 226 aa14.31□□□□□ -0.12
COL9A3-214ENST00000490398 RGS11O94810 467 aa14.31□□□□□ -0.12
COL9A3-214ENST00000490398 IGHG2P01859 326 aa14.31□□□□□ -0.12
COL9A3-214ENST00000490398 HIST1H1DP16402 221 aaKnown RBP14.31□□□□□ -0.12
COL9A3-214ENST00000490398 CEACAM6P40199 344 aa14.31□□□□□ -0.12
COL9A3-214ENST00000490398 DEFA6Q01524 100 aa14.31□□□□□ -0.12
COL9A3-214ENST00000490398 HSPB9Q9BQS6 159 aa14.31□□□□□ -0.12
COL9A3-214ENST00000490398 ATG5Q9H1Y0 275 aa14.31□□□□□ -0.12
COL9A3-214ENST00000490398 RNF150Q9ULK6 438 aa14.31□□□□□ -0.12
COL9A3-214ENST00000490398 TCRBV4S1A1TA0A5B7 111 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 SERPINE3A8MV23 424 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 TRDCB7Z8K6 153 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 FCGR3AP08637 254 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 GSTT2P0CG29 244 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 GSTT2BP0CG30 244 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 CT45A6P0DMU7 189 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 CT45A5P0DMU8 189 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 CT45A7P0DMV0 189 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 GPR12P47775 334 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 LINC00205P59089 165 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 IGSF11Q5DX21 431 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 SFXN4Q6P4A7 337 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 GLDNQ6ZMI3 551 aaPredicted RBP14.3□□□□□ -0.12
COL9A3-214ENST00000490398 SLC35E3Q7Z769 313 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 FAM71E2Q8N5Q1 922 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 OR5H6Q8NGV6 325 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 LGALS14Q8TCE9 139 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 PTX4Q96A99 478 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 R3HDM4Q96D70 268 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 KCTD7Q96MP8 289 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 ABCG5Q9H222 651 aa14.3□□□□□ -0.12
COL9A3-214ENST00000490398 PSMB11A5LHX3 300 aa14.29□□□□□ -0.12
COL9A3-214ENST00000490398 G3V4G9 280 aa14.29□□□□□ -0.12
COL9A3-214ENST00000490398 OPN1MWP04001 364 aa14.29□□□□□ -0.12
COL9A3-214ENST00000490398 OPN1MW2P0DN77 364 aa14.29□□□□□ -0.12
COL9A3-214ENST00000490398 OPN1MW3P0DN78 364 aa14.29□□□□□ -0.12
COL9A3-214ENST00000490398 C18orf65Q6ZTR6 163 aa14.29□□□□□ -0.12
COL9A3-214ENST00000490398 TPRA1Q86W33 373 aa14.29□□□□□ -0.12
COL9A3-214ENST00000490398 LIN7CQ9NUP9 197 aaKnown RBP14.29□□□□□ -0.12
COL9A3-214ENST00000490398 FABP7O15540 132 aa14.28□□□□□ -0.12
COL9A3-214ENST00000490398 ZBTB25P24278 435 aa14.28□□□□□ -0.12
COL9A3-214ENST00000490398 ACTBP60709 375 aa14.28□□□□□ -0.12
COL9A3-214ENST00000490398 FAM131AQ6UXB0 335 aa14.28□□□□□ -0.12
COL9A3-214ENST00000490398 TSPAN14Q8NG11 270 aa14.28□□□□□ -0.12
COL9A3-214ENST00000490398 YIPF6Q96EC8 236 aa14.28□□□□□ -0.12
COL9A3-214ENST00000490398 RDH8Q9NYR8 311 aa14.28□□□□□ -0.12
COL9A3-214ENST00000490398 DNAH9Q9NYC9 4486 aa14.28□□□□□ -0.12
COL9A3-214ENST00000490398 ITGB1BP1O14713 200 aa14.27□□□□□ -0.13
COL9A3-214ENST00000490398 RAB29O14966 203 aa14.27□□□□□ -0.13
COL9A3-214ENST00000490398 HSPA12AO43301 675 aa14.27□□□□□ -0.13
COL9A3-214ENST00000490398 RANBP1P43487 201 aa14.27□□□□□ -0.13
COL9A3-214ENST00000490398 CDNFQ49AH0 187 aa14.27□□□□□ -0.13
COL9A3-214ENST00000490398 STPG2Q8N412 459 aa14.27□□□□□ -0.13
COL9A3-214ENST00000490398 DRAXINQ8NBI3 349 aaPredicted RBP14.27□□□□□ -0.13
COL9A3-214ENST00000490398 RASL11BQ9BPW5 248 aa14.27□□□□□ -0.13
COL9A3-214ENST00000490398 PIPOXQ9P0Z9 390 aa14.27□□□□□ -0.13
COL9A3-214ENST00000490398 MGAT4AQ9UM21 535 aa14.27□□□□□ -0.13
COL9A3-214ENST00000490398 TSSC4Q9Y5U2 329 aaPredicted RBP14.27□□□□□ -0.13
COL9A3-214ENST00000490398 METTL21EPA6NDL7 271 aa14.26□□□□□ -0.13
COL9A3-214ENST00000490398 BET1O15155 118 aa14.26□□□□□ -0.13
COL9A3-214ENST00000490398 ARFRP1Q13795 201 aa14.26□□□□□ -0.13
COL9A3-214ENST00000490398 MMDQ15546 238 aa14.26□□□□□ -0.13
COL9A3-214ENST00000490398 KHDC1LQ5JSQ8 128 aa14.26□□□□□ -0.13
COL9A3-214ENST00000490398 LCNL1Q6ZST4 164 aa14.26□□□□□ -0.13
COL9A3-214ENST00000490398 OR4X2Q8NGF9 303 aa14.26□□□□□ -0.13
COL9A3-214ENST00000490398 OR8H1Q8NGG4 311 aa14.26□□□□□ -0.13
COL9A3-214ENST00000490398 OR4A4PQ8NGN8 299 aa14.26□□□□□ -0.13
COL9A3-214ENST00000490398 CHPT1Q8WUD6 406 aa14.26□□□□□ -0.13
COL9A3-214ENST00000490398 SLC25A38Q96DW6 304 aa14.26□□□□□ -0.13
COL9A3-214ENST00000490398 C5orf30Q96GV9 206 aa14.26□□□□□ -0.13
COL9A3-214ENST00000490398 CABLES2Q9BTV7 478 aa14.26□□□□□ -0.13
COL9A3-214ENST00000490398 ZNF107Q9UII5 783 aaPredicted RBP14.26□□□□□ -0.13
COL9A3-214ENST00000490398 A0A087WXM4 84 aa14.25□□□□□ -0.13
COL9A3-214ENST00000490398 TRBV6-7A0A0A0MS04 114 aa14.25□□□□□ -0.13
COL9A3-214ENST00000490398 H0YJW9 148 aa14.25□□□□□ -0.13
COL9A3-214ENST00000490398 SSX5O60225 188 aa14.25□□□□□ -0.13
COL9A3-214ENST00000490398 TNFAIP8O95379 198 aa14.25□□□□□ -0.13
COL9A3-214ENST00000490398 LSM3P62310 102 aaKnown RBP14.25□□□□□ -0.13
COL9A3-214ENST00000490398 IDNKQ5T6J7 187 aa14.25□□□□□ -0.13
COL9A3-214ENST00000490398 FAM71F2Q6NXP2 309 aa14.25□□□□□ -0.13
COL9A3-214ENST00000490398 NUDCD2Q8WVJ2 157 aa14.25□□□□□ -0.13
COL9A3-214ENST00000490398 TOLLIPQ9H0E2 274 aa14.25□□□□□ -0.13
COL9A3-214ENST00000490398 RHBDL2Q9NX52 303 aa14.25□□□□□ -0.13
COL9A3-214ENST00000490398 TMEM235A6NFC5 223 aa14.24□□□□□ -0.13
COL9A3-214ENST00000490398 TRIM64CA6NLI5 447 aa14.24□□□□□ -0.13
COL9A3-214ENST00000490398 MRPS15P82914 257 aaKnown RBP14.24□□□□□ -0.13
COL9A3-214ENST00000490398 CFHR3Q02985 330 aa14.24□□□□□ -0.13
COL9A3-214ENST00000490398 ZNF260Q3ZCT1 412 aa14.24□□□□□ -0.13
COL9A3-214ENST00000490398 OXLD1Q5BKU9 147 aa14.24□□□□□ -0.13
COL9A3-214ENST00000490398 SAMD5Q5TGI4 173 aa14.24□□□□□ -0.13
COL9A3-214ENST00000490398 FOXRED2Q8IWF2 684 aa14.24□□□□□ -0.13
COL9A3-214ENST00000490398 ZNF383Q8NA42 475 aa14.24□□□□□ -0.13
COL9A3-214ENST00000490398 OR4F17Q8NGA8 305 aa14.24□□□□□ -0.13
COL9A3-214ENST00000490398 EDARADDQ8WWZ3 215 aa14.24□□□□□ -0.13
COL9A3-214ENST00000490398 OR4F4Q96R69 305 aa14.24□□□□□ -0.13
COL9A3-214ENST00000490398 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.24□□□□□ -0.13
COL9A3-214ENST00000490398 AP4M1O00189 453 aa14.23□□□□□ -0.13
COL9A3-214ENST00000490398 NBR2O15453 112 aa14.23□□□□□ -0.13
COL9A3-214ENST00000490398 OR8U9P0C7N5 309 aa14.23□□□□□ -0.13
COL9A3-214ENST00000490398 SOX6P35712 828 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms