RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 AGMATQ9BSE5 352 aa15.26■□□□□ 0.03
CCM2-209ENST00000477605 GGACTQ9BVM4 153 aa15.26■□□□□ 0.03
CCM2-209ENST00000477605 C12orf49Q9H741 205 aa15.26■□□□□ 0.03
CCM2-209ENST00000477605 ZNF665Q9H7R5 613 aa15.26■□□□□ 0.03
CCM2-209ENST00000477605 GAR1Q9NY12 217 aaKnown RBP15.26■□□□□ 0.03
CCM2-209ENST00000477605 HSPB7Q9UBY9 170 aa15.26■□□□□ 0.03
CCM2-209ENST00000477605 TGIF2-C20orf24A0A0A6YYL0 155 aa15.25■□□□□ 0.03
CCM2-209ENST00000477605 IQCF6A8MYZ5 107 aa15.25■□□□□ 0.03
CCM2-209ENST00000477605 SMPD2O60906 423 aa15.25■□□□□ 0.03
CCM2-209ENST00000477605 WDR1O75083 606 aa15.25■□□□□ 0.03
CCM2-209ENST00000477605 IGHV2-70P01814 119 aa15.25■□□□□ 0.03
CCM2-209ENST00000477605 OPN1MWP04001 364 aa15.25■□□□□ 0.03
CCM2-209ENST00000477605 OPN1MW2P0DN77 364 aa15.25■□□□□ 0.03
CCM2-209ENST00000477605 OPN1MW3P0DN78 364 aa15.25■□□□□ 0.03
CCM2-209ENST00000477605 ZNF16P17020 682 aaPredicted RBP15.25■□□□□ 0.03
CCM2-209ENST00000477605 SLC38A11Q08AI6 406 aa15.25■□□□□ 0.03
CCM2-209ENST00000477605 FAM210BQ96KR6 192 aa15.25■□□□□ 0.03
CCM2-209ENST00000477605 OR51B6Q9H340 312 aa15.25■□□□□ 0.03
CCM2-209ENST00000477605 VSIRQ9H7M9 311 aa15.25■□□□□ 0.03
CCM2-209ENST00000477605 CDH20Q9HBT6 801 aa15.25■□□□□ 0.03
CCM2-209ENST00000477605 CNOT1A5YKK6 2376 aaKnown RBP15.25■□□□□ 0.03
CCM2-209ENST00000477605 TMEM30CPA0ZSE6 113 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 TM4SF5O14894 197 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 CYB5BO43169 146 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 TGFBR3Q03167 851 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 TNFRSF9Q07011 255 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 C3AR1Q16581 482 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 SPANXN5Q5MJ07 72 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 SPATA46Q5T0L3 261 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 PRR18Q8N4B5 295 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 BCL2L14Q9BZR8 327 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 HES4Q9HCC6 221 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 DMRT1Q9Y5R6 373 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 URGCP-MRPS24S4R325 110 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 TRBV24-1A0A075B6N3 115 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 MAP1LC3B2A6NCE7 125 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 CDX4O14627 284 aaPredicted RBP15.24■□□□□ 0.03
CCM2-209ENST00000477605 HIST1H2BKO60814 126 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 YIF1AO95070 293 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 MBP02144 154 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 HIST1H2BJP06899 126 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 HIST1H2BOP23527 126 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 HIST1H2BBP33778 126 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 HIST1H2BDP58876 126 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 HIST1H2BCP62807 126 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 HIST2H2BEQ16778 126 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 HIST2H2BFQ5QNW6 126 aaPredicted RBP15.24■□□□□ 0.03
CCM2-209ENST00000477605 DNLZQ5SXM8 178 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 SLC35E4Q6ICL7 350 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 HIST1H2BHQ93079 126 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 GMPPAQ96IJ6 420 aaPredicted RBP15.24■□□□□ 0.03
CCM2-209ENST00000477605 HIST1H2BNQ99877 126 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 HIST1H2BMQ99879 126 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 MAP1LC3BQ9GZQ8 125 aa15.24■□□□□ 0.03
CCM2-209ENST00000477605 TRAV39A0A0B4J263 110 aa15.23■□□□□ 0.03
CCM2-209ENST00000477605 P0C879 139 aa15.23■□□□□ 0.03
CCM2-209ENST00000477605 ZNF766Q5HY98 468 aa15.23■□□□□ 0.03
CCM2-209ENST00000477605 GALMQ96C23 342 aa15.23■□□□□ 0.03
CCM2-209ENST00000477605 SLC39A9Q9NUM3 307 aa15.23■□□□□ 0.03
CCM2-209ENST00000477605 TRGV5A0A0B4J1U4 118 aa15.23■□□□□ 0.03
CCM2-209ENST00000477605 A0A1W2PNU3 283 aaPredicted RBP15.23■□□□□ 0.03
CCM2-209ENST00000477605 HAND1O96004 215 aa15.23■□□□□ 0.03
CCM2-209ENST00000477605 CD81P60033 236 aa15.23■□□□□ 0.03
CCM2-209ENST00000477605 UBE2NP61088 152 aaKnown RBP15.23■□□□□ 0.03
CCM2-209ENST00000477605 NKX6-1P78426 367 aaPredicted RBP15.23■□□□□ 0.03
CCM2-209ENST00000477605 CATR1Q13166 79 aa15.23■□□□□ 0.03
CCM2-209ENST00000477605 MRPL37Q9BZE1 423 aaKnown RBP15.23■□□□□ 0.03
CCM2-209ENST00000477605 OR2J1Q9GZK6 312 aa15.23■□□□□ 0.03
CCM2-209ENST00000477605 RBKSQ9H477 322 aa15.23■□□□□ 0.03
CCM2-209ENST00000477605 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.23■□□□□ 0.03
CCM2-209ENST00000477605 IFITM10A6NMD0 228 aa15.22■□□□□ 0.03
CCM2-209ENST00000477605 CEBPZOSA8MTT3 80 aa15.22■□□□□ 0.03
CCM2-209ENST00000477605 C1QTNF9BB2RNN3 333 aa15.22■□□□□ 0.03
CCM2-209ENST00000477605 CDIPTO14735 213 aa15.22■□□□□ 0.03
CCM2-209ENST00000477605 ZNF737O75373 536 aa15.22■□□□□ 0.03
CCM2-209ENST00000477605 EIF4EBP1Q13541 118 aaPredicted RBP15.22■□□□□ 0.03
CCM2-209ENST00000477605 TMEM147Q9BVK8 224 aa15.22■□□□□ 0.03
CCM2-209ENST00000477605 NAT8Q9UHE5 227 aa15.22■□□□□ 0.03
CCM2-209ENST00000477605 NCOR2Q9Y618 2525 aa15.22■□□□□ 0.03
CCM2-209ENST00000477605 OOEPA6NGQ2 149 aa15.21■□□□□ 0.03
CCM2-209ENST00000477605 PPP1R2P9O14990 202 aa15.21■□□□□ 0.03
CCM2-209ENST00000477605 CLDN1O95832 211 aa15.21■□□□□ 0.03
CCM2-209ENST00000477605 WDR25Q64LD2 544 aaPredicted RBP15.21■□□□□ 0.03
CCM2-209ENST00000477605 INO80CQ6PI98 192 aaPredicted RBP15.21■□□□□ 0.03
CCM2-209ENST00000477605 SSX7Q7RTT5 188 aa15.21■□□□□ 0.03
CCM2-209ENST00000477605 LHX4Q969G2 390 aa15.21■□□□□ 0.03
CCM2-209ENST00000477605 CIB3Q96Q77 187 aaPredicted RBP15.21■□□□□ 0.03
CCM2-209ENST00000477605 LAMP3Q9UQV4 416 aa15.21■□□□□ 0.03
CCM2-209ENST00000477605 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.21■□□□□ 0.03
CCM2-209ENST00000477605 ZNF891A8MT65 544 aaPredicted RBP15.21■□□□□ 0.03
CCM2-209ENST00000477605 TMEM250H0YL14 139 aa15.21■□□□□ 0.03
CCM2-209ENST00000477605 TRGC2P03986 189 aa15.21■□□□□ 0.03
CCM2-209ENST00000477605 TUBG1P23258 451 aa15.21■□□□□ 0.03
CCM2-209ENST00000477605 IGFBP7Q16270 282 aa15.21■□□□□ 0.03
CCM2-209ENST00000477605 PNPLA5Q7Z6Z6 429 aaPredicted RBP15.21■□□□□ 0.03
CCM2-209ENST00000477605 PRR7Q8TB68 274 aa15.21■□□□□ 0.03
CCM2-209ENST00000477605 TUBG2Q9NRH3 451 aa15.21■□□□□ 0.03
CCM2-209ENST00000477605 LRRC30A6NM36 301 aa15.2■□□□□ 0.02
CCM2-209ENST00000477605 C3orf80F5H4A9 247 aa15.2■□□□□ 0.02
CCM2-209ENST00000477605 SPINK2P20155 84 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms